Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_1260 |
Symbol | |
ID | 3909194 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 1441778 |
End bp | 1443796 |
Gene Length | 2019 bp |
Protein Length | 672 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637883154 |
Product | hydrogenase 4 subunit B |
Protein accession | YP_484881 |
Protein GI | 86748385 |
COG category | [C] Energy production and conversion [P] Inorganic ion transport and metabolism |
COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0751084 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGAAC TTGCGGTTCA GCTCTGGTGC GTGGCGGTGC TGCTCGCGAT CGCGGTCATC GCGGTTCCGC TGAGCCGGAG GCCGGGCCTC GCCACCGCAA CCATCTATTC CGCGACGCTG GTCACCTGCG CGGTCGCCAC CGCCAGCGCA CTGACCTGGC TGCTGCTGCA TGCGGACGCC GCCGCCCAGC GCACGCTGCC GATCGGGCTG CCCTGGCTCG GCGCGCATCT GCGGCTCGAT GCGCTCGCGG CGTTCTTCCT CGTCGTGGTC AATCTCGGCG GCACGCTGGC GAGCCTGTAT GCGCTCGGCT ATGGCCGGCA CGAGCACGCG CCGCATCGCG TGCTGCCGTT CTATCCGGCG TTTCTGGCCG GCATGAACAT GGTGGTGCTC GCCGCCGACG CGTTTTCTTA TCTGCTGAGC TGGGAATTCA TGTCGCTGGC GTCGTGGGCG CTGGTGATGG CGCATCACCG CGACGGATCC AATCGCCGCG CCGGCTATGT CTATCTGCTG ATGGCGAGTT TCGGCACGCT GGCGCTGCTC TTGGCGTTCG GCCTGCTCGC GGGCGCCGCC GGAAATTACG ATTTCGCCGC GATCCGCGCC GCGCAGCACG CGCCGTGGAT CGCGACGCTG GTGCTGATCC TGCTGCTGCT CGGCGCCGGC TCCAAGGCCG GGCTTGTCCC CTTGCATGTC TGGTTGCCGC TGGCGCATCC GGCGGCGCCG AGCCACGTCT CGGCGCTGAT GAGCGGCGTG ATGACCAAGG TCGCGGTCTA CGGCTTCATC CGCGTGGTGT TCGATCTGCT CGGCACGCCG GACTGGTCGA CCTCCGGGAT CGTGCTGGCG CTCGGCGGCA TCACGGCGGC GCTCGGCATT CTTTATGCGC TGATGGAGAA GGACCTGAAG CGGCTGCTGG CCTATTCGAC GATCGAGAAT GTCGGCATCA TCTTCGTCAG CCTCGGCCTC GCGCTGGCGT TCCAGGCCAA TCATCAGCCG CTGCCGGCGG CGCTGGCCTT CACCGCGGCG CTGTTCCACG TGCTCAACCA TTCGCTGTTC AAGAGCCTGC TGTTCTTCGG CGCCGGCGCG GTGCTGAGCG CCACCGGCGA GCGCGACATG GACAAGCTCG GCGGACTGAT CCATCGCATG CCGGTGACCA GCGTGGTGTT CCTGATCGGC AGCGTCGCGA TCTCGGCGCT GCCGCCGTTC AACGGCTTCG TCTCGGAATG GCTGATCTTC CAGGCGGTGC TGCAGAGCCC GCAACTGCCG CAATGGGGAT TGAAAATTCT GGTGCCGGCG GTCGGCGGCT TGATGGCGCT CGCGGCGGCG TTGGCGGCGG CGTGTTTCGT CAAGGCCTAT GGCGTGACGT TCCTCGGCCG GCCGCGCGGC GCCGCGACGC TGGCTGCCAA AGAGGTCGAT CGCTTCTCGC TCGCCGCGAT GGCGATCCTC GCCGCGCTGT GTCTCGCCGC CGGCGTGCTG CCCGGACTGG TGATGGACAC GCTGGCGCCG ATCGCGACCG AGATTCTCGG CAGCCGGCTG GCGCCACAAA CGCCGCTCGC CTGGCTGTCG ATCGTGCCGA TCGCGCAAAG CCACAGCTCC TATAATGGCC TGCTGGTCGC ATTGTTCATC GCGGTGTCGG CGTCGTTGCT GTTCGTCGCG ATCCGGCTGT TCTCGTCGGG CGCGGTCCGC CGCGGCCCGG CCTGGGGCTG CGGCTTCACC GAGCCTGCGC CGCTCGCGCA ATATTCCGCG GCCGGCTTCG CGCAGCCGAT CCGCCGGGTG TTCGGCACGC TGATCTTCCG CGCCCGCGAT CACGTCACGA TGCCGCCGCC GGGCGACACG GCGCCGGCGC GGCTGCGGAT CGAACTGCAC GACCAGATCT GGGAGCGGAT CTACGCGCCG CTCGCCGGCG GCGTCATGGC CGCCTCGGTG CGCCTCAACC GGATGCAGCT CCTCACCATC CGCGGCTATC TCAGCCTGGT GTTCGCCACC CTCGTCACGC TGCTGCTGGT GCTCGCGATA TGGACGTGA
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Protein sequence | MTELAVQLWC VAVLLAIAVI AVPLSRRPGL ATATIYSATL VTCAVATASA LTWLLLHADA AAQRTLPIGL PWLGAHLRLD ALAAFFLVVV NLGGTLASLY ALGYGRHEHA PHRVLPFYPA FLAGMNMVVL AADAFSYLLS WEFMSLASWA LVMAHHRDGS NRRAGYVYLL MASFGTLALL LAFGLLAGAA GNYDFAAIRA AQHAPWIATL VLILLLLGAG SKAGLVPLHV WLPLAHPAAP SHVSALMSGV MTKVAVYGFI RVVFDLLGTP DWSTSGIVLA LGGITAALGI LYALMEKDLK RLLAYSTIEN VGIIFVSLGL ALAFQANHQP LPAALAFTAA LFHVLNHSLF KSLLFFGAGA VLSATGERDM DKLGGLIHRM PVTSVVFLIG SVAISALPPF NGFVSEWLIF QAVLQSPQLP QWGLKILVPA VGGLMALAAA LAAACFVKAY GVTFLGRPRG AATLAAKEVD RFSLAAMAIL AALCLAAGVL PGLVMDTLAP IATEILGSRL APQTPLAWLS IVPIAQSHSS YNGLLVALFI AVSASLLFVA IRLFSSGAVR RGPAWGCGFT EPAPLAQYSA AGFAQPIRRV FGTLIFRARD HVTMPPPGDT APARLRIELH DQIWERIYAP LAGGVMAASV RLNRMQLLTI RGYLSLVFAT LVTLLLVLAI WT
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