| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1222 |
|---|
| Symbol | |
|---|
| ID | 3910157 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 1398031 |
|---|
| End bp | 1399692 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637883116 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_484843 |
|---|
| Protein GI | 86748347 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACA TGACCGACAA CGTTCTCGAA ATCGACAATC TGGTCGTCCG GCTCGGCAAG
AGCGGCGACG GTGACAAGGT GATCGACGGC ATCTCGCTGG CGGTGCGGCC CGGCGAGACG
ATGTGCCTGG TCGGCGAAAG CGGCTCCGGC AAATCGGTGA CGTCGCTGGC CACCATGGGG
CTACTGCCGA AGGGCGTGCT GCACGCCACC GGCGGCGAGA TCCGGCTCGC CGGCGAGAAC
GTGCTCGCCG CCAGCGAGCG GCGGCTGCGC CAGTTGCGCG CCTCCAGGAT GGCGATGATC
TTTCAGGAGC CGATGACCGC GCTCAATCCG GTTGTGCCGG TCGGCAAGCA GATCGACGAG
GTGCTGCGCT TCCACACCGA TCTCGGCGCC CGCGCGCGCC GGCAGCGCAT CCTCGACATG
ATGCAGCAGG TCCGCCTGCC GGAGGTCGAG CGGATCTTCG CGTCCTATCC GCACCGCCTC
TCCGGCGGCC AGCGCCAGCG CATCATGATC GCGATGGCGC TGGTGCTCGA ACCCAAATTG
CTGATCGCCG ACGAGCCGAC CACCGCACTC GACGTCACCA CCCAGAAGCA GATCCTGACG
CTGATCCGCG AATTGCAGCA GGCGCACGGC ACCGCGGTGC TGTTCATCAC CCACGACATG
GGCGTAGTCG CCGAGATCGC CGACCGCGTC GCGGTGATGC GCCACGGCCG GCTGGTCGAG
ACCGGCAAGC TCGACGCCGT GCTGCGGACG CCGACCATGG ACTACACCCG CAATTTGCTG
TCGGCGGTGC CGAGCCTGGT GCCGCGGGCG CCGCGCGAGG CCACAAGGCT GCCGGTGGTG
CTCGAAGCCA ATGAACTCGG CAAGGTGTAT CGCGAGCGTT CCTTCCTCGG CGGTCGGCGC
GAAGTCGTCG CGGCCAAGGA CGTGACGCTG ACGCTGCACA AGGGCCGCAC GCTCGGCATC
GTCGGCGAAA GCGGCTCCGG CAAATCCACC GTGGCGCGCT GCATCGTTCG GCTGATCGAT
CCGACCTCGG GGGGCATCCG CCTCGCCGGC CGCGAGATCT CCGATCTGTC GCGCCGGCTG
CTGCGGCCGC ACCGCAAGAA GATCCAGATC ATCTTCCAGG ACCCGTATCG CTCGCTCAAT
CCGCGCGTCA GCGTCGGCGA GAGCATAGCC GAGGGGCCGA TCAATTACGG CGTGTCGCGC
GCCGACGCGA TGGCCAAGGC GCGGCAATTG CTCGAACTGG TGCATCTGCC GGCCGACGCG
ATCTCGCGCT ATCCGCACCA GTTCTCCGGC GGCCAACGCC AGCGCATCGC GATCGCCCGC
GCGCTGGCGC TCGATCCCGA CGTGCTGGTG GCCGACGAGG CGGTGTCGGC GCTCGACGTC
TCGGTGCAGG CCCAGGTGCT CGACCTGCTC GACGAGATCC AGACCCGGCT CGGCATTGCG
CTGCTGTTCA TCACCCACGA TCTGCGCGTC GCCGCCCAAA TCTGCGACGA CGTCGCGGTG
ATGGAGAAGG GCGTCGTCGT CGAGCAGGGC CCGGCCGCCG AGGTGCTGAC CAATCCGAAG
CAGGCCTATA CGCGGCAATT GCTCGAAGCC GCGCCCGGCC GCGGCTGGGA TTTCGCCAAT
TTCCGCCCCG TGAGCGAGGC GCCGCAGGCG GTGGTGAACT AA
|
|---|
| Protein sequence | MSDMTDNVLE IDNLVVRLGK SGDGDKVIDG ISLAVRPGET MCLVGESGSG KSVTSLATMG
LLPKGVLHAT GGEIRLAGEN VLAASERRLR QLRASRMAMI FQEPMTALNP VVPVGKQIDE
VLRFHTDLGA RARRQRILDM MQQVRLPEVE RIFASYPHRL SGGQRQRIMI AMALVLEPKL
LIADEPTTAL DVTTQKQILT LIRELQQAHG TAVLFITHDM GVVAEIADRV AVMRHGRLVE
TGKLDAVLRT PTMDYTRNLL SAVPSLVPRA PREATRLPVV LEANELGKVY RERSFLGGRR
EVVAAKDVTL TLHKGRTLGI VGESGSGKST VARCIVRLID PTSGGIRLAG REISDLSRRL
LRPHRKKIQI IFQDPYRSLN PRVSVGESIA EGPINYGVSR ADAMAKARQL LELVHLPADA
ISRYPHQFSG GQRQRIAIAR ALALDPDVLV ADEAVSALDV SVQAQVLDLL DEIQTRLGIA
LLFITHDLRV AAQICDDVAV MEKGVVVEQG PAAEVLTNPK QAYTRQLLEA APGRGWDFAN
FRPVSEAPQA VVN
|
|---|
| |