| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1129 |
|---|
| Symbol | |
|---|
| ID | 3909216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 1297671 |
|---|
| End bp | 1298177 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637883022 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_484750 |
|---|
| Protein GI | 86748254 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00426459 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.464003 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCGA TGCAACCAAT CCCGTCAGCG AGCGCCAGCA CTCCGTTCGG CGCAGATGGA
GCTGCGCGCG CTGCGCAGCT CGCAGCGGCC AACATCAATC CCCGCACCGG CCTCGCCACC
GACTATCTGA ATCACTTCAA CGAAGCGGTC ATGCTGCTCG AAATGATTCC CGATATGCCG
GAATGCGCGG AAGATTTCCT CGCCTGGCAA CCGCTGTCCT ATGCCGAGCA TTTCAAAGCC
TCGAACTTCA AGGCACGCGA CCTCGCGATC GAAGCCTATG AAACCGCCGA CCCCGGCATC
CGCTCGGATT TCGACGACAT CATCGACAAC ATGACCCGGA TCCTCACCGC GGTCGGCGAT
GCGATGCGCG GAGCCCAGCA GGACGCCACG CGCGCGCGAC TCGCCGAGGA GGCGGTCGGC
TGGATCAAGC CGATGATCGG CCGCGCCGGC GGCGTCATCA ACGGCCAGGG CAGCGAGGCC
GACGTCGACT ACATCATGGC GCACTGA
|
|---|
| Protein sequence | MSSMQPIPSA SASTPFGADG AARAAQLAAA NINPRTGLAT DYLNHFNEAV MLLEMIPDMP
ECAEDFLAWQ PLSYAEHFKA SNFKARDLAI EAYETADPGI RSDFDDIIDN MTRILTAVGD
AMRGAQQDAT RARLAEEAVG WIKPMIGRAG GVINGQGSEA DVDYIMAH
|
|---|
| |