| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1085 |
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| Symbol | |
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| ID | 3910171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1245973 |
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| End bp | 1247751 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637882978 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_484706 |
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| Protein GI | 86748210 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCTTC ACCGCTTCCG TCGTTCGATG TTTGTCGCCG TCACCGTCGC GGCGCTGCCG
ATCGCGGGGC AGGCGCTGGC GCAGACTCCG GACCATCCGG GCGACAATTC CGCGCAGTTT
CCGACCAGCC AGGATCTGCG GTCGATGACC ACGGCGGGCA GCTATCTCGC CGCCCGCCAC
GCCAGCGTCG AGCGCGACGC CGCCTCGGCC GCGGCGTTCT ATCGGTCGGC GCTGCGCACC
GACCCGAAGA ACAACGAATT GCTCGACCGC GCCTTCATCT CTTCGCTGGC CGAAGGCAAT
ATCGAGGAGT CGGTCAAGCT CGCCGACCGG ATTCTCAAGA TCGACAAGAC CAACCGCGTG
GCGCGGCTGG TGATCGGCGT GCGCGATCTG AAGACCAAGA AATACGCCGC AGCGGTCCAG
AACGTGAATC TGTCGGTCCG CGGCCCGATC ACCGATCTGG TCGCGACGCT GCTGTCGAGC
TGGGCGATGG AGGGCGCCGG CGACGTCAAG GGCGCCGTCG CCAATATCGA CAAGCTCGCC
GGTCCGGAAT GGTATCCGAT CTTCAAGGAT CTGCATTCCG GCATGATGCT CGAGCTCGCC
AACAAGCAGA AGGACGCCGG CGTCCGCTTC GAGCGGGCCT ACAAGCTCGA CGATTCCGCG
CTTCGGGTGA CGGATGCCTA TGCGCGCTGG CTGTCGCGCA ACAAGGACGA CGGCTCCGCG
GTCGCGATCT ACGAGGGCTT CGACAAGAAG CTGTCGCGCC ATCCGTTGGT GTTGGAGGGA
TTGCGTGACG CCAAGGCCGG CAAGAAGCTG CCGCCGCTGG TCGACAGCCC GCAGGCCGGC
GCTGCCGAAG CGCTGTACGG TATCGGAGCG TCGCTGACCC GCCGTGGCGG CGAGGACCTC
GCGCTGGTCT ATCTGCAGCT CGCGCTGTAT CTGAAGCCCG ATCACGCGCT GGCGCTGCTG
GCGCTCGGCG ATCTGTACGA ATCGGTGAAG AAGCCGCAGA TGGCGGTGAA GGTCTACGAG
CGCGTGCCGG CGGATTCGCC GCTCAAGCGC AACGCCCAGA TCCAGCTCGC CACCGATCTC
GACGCGATCG ACCGCAGCGA GGAAGCGATC AAGATCCTGA AGACGGTTAT CGCCGAGGAC
GGCAAGGACC TCGAGGCGAT CATGGCGCTC GGCAACATCG AGCGCGGCCG CAAGAAGTTC
GCCGATTGCG CGGTCACCTA CAGCCAGGGC ATCGATGCGC TCACCGGCAC CGAGAAGAAC
AGCTGGGTCT ATTATTATTT CCGCGGCATC TGCGAGGAGC GTTCCAAGCA GTGGGCCAAG
GCCGAGGTCG ACATGAAGAA GGCGCTGCAG CTGCAGCCCG AGCAGCCGCA TGTTCTGAAC
TATCTCGGCT ATTCCTGGAT CGACCAGGGC ATCAATCTCG ACGAAGCGAT GAAGATGATC
AAGCGCGCCG TCGATCAGCG CCCCGACGAC GGCTACATCG TCGACTCGCT CGGCTGGGCT
TATTTCCGCA TCGGCAATTA CGAAGAGGCG GTGAAGACGC TGGAGCGCGC CATCGATCTG
AAGCCGGAAG ATCCGACCAT CAACGATCAC CTCGGCGACG CCTATTGGCG CGTCGGGCGA
ACGCTGGAGG CGCGCTTCCA GTGGGCGCAC GCCCGCGATC TCAAGCCGGA TCCGGAAGAG
TTGCCGAAGA TCGAGGCCAA GCTCGCCAAC GGTCTCCCGG AGGACACCTC GTCGGCGGCG
TCGGCGGACA AGAAAAAAGA CGACGACAAG GGCGGCTGA
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| Protein sequence | MLLHRFRRSM FVAVTVAALP IAGQALAQTP DHPGDNSAQF PTSQDLRSMT TAGSYLAARH
ASVERDAASA AAFYRSALRT DPKNNELLDR AFISSLAEGN IEESVKLADR ILKIDKTNRV
ARLVIGVRDL KTKKYAAAVQ NVNLSVRGPI TDLVATLLSS WAMEGAGDVK GAVANIDKLA
GPEWYPIFKD LHSGMMLELA NKQKDAGVRF ERAYKLDDSA LRVTDAYARW LSRNKDDGSA
VAIYEGFDKK LSRHPLVLEG LRDAKAGKKL PPLVDSPQAG AAEALYGIGA SLTRRGGEDL
ALVYLQLALY LKPDHALALL ALGDLYESVK KPQMAVKVYE RVPADSPLKR NAQIQLATDL
DAIDRSEEAI KILKTVIAED GKDLEAIMAL GNIERGRKKF ADCAVTYSQG IDALTGTEKN
SWVYYYFRGI CEERSKQWAK AEVDMKKALQ LQPEQPHVLN YLGYSWIDQG INLDEAMKMI
KRAVDQRPDD GYIVDSLGWA YFRIGNYEEA VKTLERAIDL KPEDPTINDH LGDAYWRVGR
TLEARFQWAH ARDLKPDPEE LPKIEAKLAN GLPEDTSSAA SADKKKDDDK GG
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