| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1028 |
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| Symbol | |
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| ID | 3909152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 1179777 |
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| End bp | 1181042 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637882921 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_484649 |
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| Protein GI | 86748153 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.306514 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTCGCAA CAGGTACTGA AGAACCGCGA AACGTTCACC CGAGCGCGAC GCGGCGCCGC
CTCGAGATCA AGATGACGCT GAGCAGCAAG GTCGCGAACA CCGTCTACAT CGAATTCGTT
CGACTGCTGT ACACGGCGCG CTGGCCCATC GCGGTGGTCG GCGCCGCGAT CCTGATGGTG
GGGCTGGCCG TCGGCCGGCA GACCGGCGAT CTCGTCGCCC CGGCGATCGG CATCATCGGC
ATGCTGGTGA CGGTCGGGCG GCTCGCGCTG TGCGTCGCCT TCGATCGCAC CGTGCAGCGC
CGGCCGCTCG ATCTCGCCTC CGCCAAAGTG TGGGAGCGGC GCCTCGCCAT CGGCGTGATC
GCCACCGGCG TCTGTGTCGG CGGCTTTGCG GTGCGCTGCT TCCTGCTGCC CGATCTGACC
GCCCATATGG TCGCCGGCGG GCTCGTGTTC GGCTACTGCG CCGGGACGAC GACGCGCTTT
TCGATCCGTC CATGGATCGT CAAAGCCAGC CTCGGCGTCT CCGTCATCCC GGCGGTGTCG
GCGGCATTGT GGAATTTCGA TCTGATGCAC GCCGCGCAGG CGCTGCTGTT CCTGATCTTC
TTCTTCGGCG GCTTCGAGCT GATCGTCTAC ATCCACGACA CCACCCGGGA GCAATTGACG
TTGCGCGCCG AGGCCGCGCA TCTGGCCCGC GCCGACGTGC TCACCAAACT GCCGAACCGG
CTGCGCCTCG CCGAGCATTT CGAAGAGACC GCGGCCCGGC TGCGGCGGCA CAAGGAAGGC
TTCGCCGTGA TCGGCGTCGA TCTGGATTTC TTCAAGGAGG CCAACGACCG GTTCGGCCAC
GCCACGGGCG ACGAATTGCT CCGGATGGTC GCGACACGGC TGACCGGACT GTTGCGGGAG
CACGACCTCG CCGCCCGGAT CGGCGGCGAC GAATTCGTCG TGATCCAGGC CGACGTCTCC
GACCGCCGCG ACGTCGAACG GCTGTGCCGC CGCATCGTCG AGACGCTGTC CGCCCCCTAT
GCGATCGACG GCCACAGCAT CACGCTGGGC GCCAGCCTCG GCACCGCGAT CGCGCCCGAC
GACGGCACCA GCCTCGACGA TCTGCTCGCC AAGGCGGACG CGGCGCTGTA CGCGGTCAAA
CGCAACCGCT CCGGGCGAAC ATCGGGCGCT GCAGCCGCAC GCGACGCCGC TCCGCTCGCG
CCGGATGTGC CGGACGGCGC AGAGCCGACG CGCGGAGCGC CGCAGCCGCT GCAATTCCAC
GCCTGA
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| Protein sequence | MLATGTEEPR NVHPSATRRR LEIKMTLSSK VANTVYIEFV RLLYTARWPI AVVGAAILMV
GLAVGRQTGD LVAPAIGIIG MLVTVGRLAL CVAFDRTVQR RPLDLASAKV WERRLAIGVI
ATGVCVGGFA VRCFLLPDLT AHMVAGGLVF GYCAGTTTRF SIRPWIVKAS LGVSVIPAVS
AALWNFDLMH AAQALLFLIF FFGGFELIVY IHDTTREQLT LRAEAAHLAR ADVLTKLPNR
LRLAEHFEET AARLRRHKEG FAVIGVDLDF FKEANDRFGH ATGDELLRMV ATRLTGLLRE
HDLAARIGGD EFVVIQADVS DRRDVERLCR RIVETLSAPY AIDGHSITLG ASLGTAIAPD
DGTSLDDLLA KADAALYAVK RNRSGRTSGA AAARDAAPLA PDVPDGAEPT RGAPQPLQFH
A
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