Gene RPB_1000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_1000 
Symbol 
ID3909297 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp1144232 
End bp1146100 
Gene Length1869 bp 
Protein Length622 aa 
Translation table11 
GC content70% 
IMG OID637882893 
Productlong-chain-acyl-CoA synthetase 
Protein accessionYP_484621 
Protein GI86748125 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.832439 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATCC AACCACGATC CGTGACGGCG GACGCGACGC AGGCCCCGCC TGCGCGGGGG 
GCTGCGACCA CTGCCCCGTC CGTCACCAAA TCTCCTGTCA CCAAGCCTCC TTCCGTCACC
AAGAGCTGGC TGCGGGCGAT CGAGATCACC TCGCGGATCG AGACCGAACC GCGCCGGCTG
CTGGCCTCCG TGATCGACGA ATGGGCCGCC GCCGCGCCGC AGCGGGACGC GATCGTGTCG
GATCGCGAAT CCTTCAGCTA CGCGGCGCTG GCCGATCGCA TCGACCGCTA CGCGCGCTGG
GCGCTGACGA ACGGGATCGG GATCGGCGAC GTGGTGTGTG TGCTGATGCC GAACCGGCCG
GACTATCTGG CGGCGTGGCT CGGCATCACC AAGGTCGGCG GCGTCGCGGC GCTGATCAAC
ACCCAGCTCG TCGGCGCCTC GCTGGCGCAT TGCATCGAGG TCGCGCAGCC GAAACACGTC
ATCGTCGCCG ACGAACTGGC GGAGGCCTTC GCGAGCGCCC GCCCACATCT CGCGCAGGCC
CCACGCGTAT GGACGCATGG CGGCGCTGGC GCCGATTCGA TCGACCAGGC GCTAGCCGCG
CTCGACGCCG GCCCGCTGGC GCCGCACGAA CGGCGCGAGG TCTCGATCGA GCATCTGGCG
CTGCTGATCT ACACCTCCGG CACCACCGGG CTGCCGAAGG CCGCGCGAGT CACGCATCGC
CGGGTGATGA GCTGGGCCGG CTGGTTCGCC GGCCTCACCG ACGCCGGGCC CGGCGACCGG
ATGTACAATT GCCTGCCGAT CTATCACAGC GTCGGCGGCG TGGTGGCGCC CGGCAGCCTG
TTGATGGCCG GCGGCTCGGT GGTGATCGCC GAAAAGTTTT CCGCGAGCCG GTTCTGGGAC
GACATCGCCC GCTGGGATTG CACGCTGTTT CAATATATCG GCGAGCTCTG CCGCTATCTG
CTGCAGGCGC CGCCGCGCGC GCGCGACACG CAGCACCGGC TGCGGCTGGC TTGCGGCAAC
GGGCTGCGCG GCGACGTCTG GGAGGCGTTC CAGGCGCGCT TCGCGATTCC GCGCATCCTC
GAATTCTACG CCTCGACCGA AGGCAATTTC TCGCTCTACA ATGTCGAGGG CAGGCCCGGC
GCGATCGGCC GCGTGCCGTC GTTCCTGGCG CATCGCTTTC CGGCCGCGAT CGTGAAGTTC
GACCTCGACA GCGGCCTTCC GCTGCGCGGC GACGACGGGC TGTGCGTCCG CTGCGCGCGC
AACGAGCCCG GCGAGGCGAT CGGCCGGATC GGCGACGCCG CCGATCGCGG CGGCCGGTTC
GAGGGCTACA CCAGCGATGC CGCGAGCGAC ACCAAGGTGC TGCGCGACGT GTTCGCCAGG
GGCGACGCCT GGTATCGCAC CGGCGACCTG ATGCGGCTCG ACGATCAGGG CTTCTTCCAT
TTCGTCGACC GCATCGGCGA CACCTTCCGC TGGAAGGGCG AGAACGTCGC GGCGAGCGAA
GTCGCCGAGG CGATCGCCGC CTGCCCAGGC GTGACCGACG TCAGCGTCTA TGGCGTCAGC
GTGCCGCAGC ACGACGGCCG CGCCGGCATG GCCGCGCTGG TGGTCGACGC GCGGTTCGAT
ATCGACGCGC TGCATCGCCA TCTGGCCGAT CGGCTGCCGT CCTACGCGCG CCCGCTGTTC
CTGCGGCTGC GCCCGGCGCT GGAAATCACC GGCACGTTCA AGCAGAACAA GCAGGATCTG
ATCCGCGACG GATTCGATCC CGGCGTGGTG AGCGATCCGC TCTATGTCGG CGGGGCCCAG
GCCGCGCGCT ACGTCGCGCT CGACGAGGAC CTGCACCGCC GCATCGCCGC AGGCGAGCTG
CGGCTGTGA
 
Protein sequence
MNIQPRSVTA DATQAPPARG AATTAPSVTK SPVTKPPSVT KSWLRAIEIT SRIETEPRRL 
LASVIDEWAA AAPQRDAIVS DRESFSYAAL ADRIDRYARW ALTNGIGIGD VVCVLMPNRP
DYLAAWLGIT KVGGVAALIN TQLVGASLAH CIEVAQPKHV IVADELAEAF ASARPHLAQA
PRVWTHGGAG ADSIDQALAA LDAGPLAPHE RREVSIEHLA LLIYTSGTTG LPKAARVTHR
RVMSWAGWFA GLTDAGPGDR MYNCLPIYHS VGGVVAPGSL LMAGGSVVIA EKFSASRFWD
DIARWDCTLF QYIGELCRYL LQAPPRARDT QHRLRLACGN GLRGDVWEAF QARFAIPRIL
EFYASTEGNF SLYNVEGRPG AIGRVPSFLA HRFPAAIVKF DLDSGLPLRG DDGLCVRCAR
NEPGEAIGRI GDAADRGGRF EGYTSDAASD TKVLRDVFAR GDAWYRTGDL MRLDDQGFFH
FVDRIGDTFR WKGENVAASE VAEAIAACPG VTDVSVYGVS VPQHDGRAGM AALVVDARFD
IDALHRHLAD RLPSYARPLF LRLRPALEIT GTFKQNKQDL IRDGFDPGVV SDPLYVGGAQ
AARYVALDED LHRRIAAGEL RL