| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0957 |
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| Symbol | |
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| ID | 3909312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1106632 |
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| End bp | 1108383 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637882850 |
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| Product | transcriptional regulator NifA |
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| Protein accession | YP_484578 |
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| Protein GI | 86748082 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCAGC GCGAAGTACG TCTTGTCGAG AGCGAGCAAT CGCGGCAGCC GATGAACCAG
AACCCGATAC CGCTGAGTGA GATTGCGCTC ACCGGCATTT TTGAAATCTC CAAGATCCTC
ACAGCGCCGG CGCGGCTCGA AGTCACGCTC GCGAATGTCG TCAATCTGCT GCAGTCCTTT
CTGCAGATGC GAAATGGCGT CGTGTCGCTG CTGGCCGACG ACAGTGTTCC CGACATCACG
GTCGGCGTGG GCTGGAACGA AGGCAGCGAC AATCGCTATC GCGCGCGACT CCCGCAGAAA
GCCATCGACC AGATCGTCGC CACCTCGGTG CCGCTGGTCG CCGACAACGT GGCCGCGCAT
CCGATGTTCT CCGCCGCCGA CGCGCTCGCG CTGGGCGCGA CCGACGAGAC CCGTGTGTCG
TTCATCGGCG TGCCGATCCG GATCGATTCG CGGGTCGTGG GCACCCTGAC GATCGACCGG
GTTCGCGACG GGCAGTCGAT CTTCCGGATG GACGCCGATG TCCGGTTCCT GACTATGGTC
GCCAATCTGA TCGGGCAGAC CGTGAAGCTG CATCGCGTGG TGGCGCGTGA TCGCGAGCGG
CTGATGGCGG AAAGCCATCG CCTGCAGAAA GAGCTGTACG AGTTGAAGCC GCAGCGCGAG
CGCAAGCGCG TCCGGGTCGA CGGCATCGTC GGCGAGAGCC CGGCGATCCG CACGTTGCTC
GCCAAGGTCA GCATCATCGC CAAATCGCAG TCGCCGGTGC TTTTGCGCGG CGAGTCCGGC
ACCGGCAAGG AACTGATCGC CAAGGCGATC CACGAATTGT CGGCGCGCGC CAACGGGCCC
TTCATCAAGA TCAACTGCGC CGCGCTGCCG GAGTCGGTGT TGGAATCCGA ACTGTTCGGC
CACGAGAAGG GGGCTTTCAC CGGCGCGATC GCTTCACGCA AGGGCCGGTT CGAACTCGCC
GACAAGGGCA CGCTGTTTCT CGACGAGATC GGCGAGATCT CGGCCTCGTT CCAGGCCAAG
CTGCTGCGCG TGCTGCAGGA GCAGGAGTTC GAGCGGGTCG GCGGCAACCA GACCATCAAG
GTCAACGTCC GAATCGTCGC GGCGACCAAC CGCAATCTCG AAGAGGCCGT CGCCCGCAAG
GAGTTCCGCG CCGATCTGTA CTACCGCATC AACGTCGTGC CGATGATCCT GCCGCCGCTG
CGCGATAGGC CGACCGATAT CCCATTGCTG GCGAGCGAGT TCCTGAAGAA CTTCAACAAG
GAGAACGATC GCGAACTGCA ATTCGAGCCG CATGCGCTGG AATTGCTGAA GGCGTGCTCG
TTCCCGGGCA ACGTTCGCGA ACTCGAGAAC TGCGTGCGGC GCACGGCGAC GTTGGCGATC
GGGCCGGAAA TTACCGACAG CGATTTCGCC TGCCATCAGG ACGAATGCCT GTCGGCGATC
TTGTGGAAGG GCCACGCCGA ACCGGCACCG GTACGGCCGC GGCCGCAGAT TCCGCTGCAG
GTGATGCCGC GCAAGGCGCC GCTCGAAGTC GTGGCGCCGC GCGAGGCCGT GAGTGTGTCG
CCCGATCCGG TGTCGACACC CATGTCCGCC GAATCGGCCA ACGGCGGGCC GATGTCGGAG
CGCGAGCGCT TGGTCAACGC GATGGAGCGA TCCGGCTGGG TCCAGGCAAA GGCCGCCCGG
CTGCTCGGCC TGACGCCGCG GCAGATCGGC TACGCGCTGA AGAAGTACGA TATCGAGCTC
AAACACTTCT GA
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| Protein sequence | MAQREVRLVE SEQSRQPMNQ NPIPLSEIAL TGIFEISKIL TAPARLEVTL ANVVNLLQSF
LQMRNGVVSL LADDSVPDIT VGVGWNEGSD NRYRARLPQK AIDQIVATSV PLVADNVAAH
PMFSAADALA LGATDETRVS FIGVPIRIDS RVVGTLTIDR VRDGQSIFRM DADVRFLTMV
ANLIGQTVKL HRVVARDRER LMAESHRLQK ELYELKPQRE RKRVRVDGIV GESPAIRTLL
AKVSIIAKSQ SPVLLRGESG TGKELIAKAI HELSARANGP FIKINCAALP ESVLESELFG
HEKGAFTGAI ASRKGRFELA DKGTLFLDEI GEISASFQAK LLRVLQEQEF ERVGGNQTIK
VNVRIVAATN RNLEEAVARK EFRADLYYRI NVVPMILPPL RDRPTDIPLL ASEFLKNFNK
ENDRELQFEP HALELLKACS FPGNVRELEN CVRRTATLAI GPEITDSDFA CHQDECLSAI
LWKGHAEPAP VRPRPQIPLQ VMPRKAPLEV VAPREAVSVS PDPVSTPMSA ESANGGPMSE
RERLVNAMER SGWVQAKAAR LLGLTPRQIG YALKKYDIEL KHF
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