Gene RPB_0829 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0829 
Symbol 
ID3909644 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp942779 
End bp944044 
Gene Length1266 bp 
Protein Length421 aa 
Translation table11 
GC content66% 
IMG OID637882722 
Productdiaminopimelate decarboxylase 
Protein accessionYP_484451 
Protein GI86747955 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0019] Diaminopimelate decarboxylase 
TIGRFAM ID[TIGR01048] diaminopimelate decarboxylase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCATT TCGACTACCG CGACGGCGTG CTGCACGCCG AAGGCGTTGG CCTTGAAGTG 
CTCGCGCGCG AGGTCGGCAC GCCGTTTTAT TGCTACTCCA CCGCGACGCT GGAGCGGCAC
TACCGCGTCT TCAGCGAAGC CTTCGCCGGC ACCGACGCGC TGGTCTGCTA CGCGATGAAG
GCGAACTCGA ATCAATCGGT GTTGCGCACG CTGGCCAGGC TCGGCGCCGG TGCCGATGTT
GTTTCGGGCG GTGAATTGCA GCGCGCGCTG GCCGCGGGCA TCCCGGCGAG CAAGATCGTG
TTCTCCGGCG TCGGCAAGAC CGAGGCCGAA TTGCGCGCCG CGCTGGCGCA CGACATCAAG
TGCCTCAACG TCGAATCCGA GCCCGAGCTG GAATTGCTGT CGCGGCTCGC GGTCGAGACC
GGGCGGACCG CGCGGATTTC GATCCGGGTC AATCCGGACG TCGATTCCGG CACCCACGCC
AAGATCTCGA CCGGCAAGTC GGAGAACAAA TTCGGCATTC CGCTCGTGCA TGCGCGTGAG
GTCTATGCGC GCGCGGCGAA GCTGCCCGGC ATCCTGATAT CGGGCGTCGA CGTCCATATC
GGCAGCCAGA TCATCGATCT GGCGCCGATG GAGGCCGCGT TCCGCCTCGT CGCCGAATTC
GTGCACCAGT TGCGCGGCGA TGGCCACACG ATCAGTCACG TCGATTTCGG CGGCGGCCTC
GGCATTCCGT ACTACGAGGA TCGTGACGCG CCGCCGGAGC CGTTCGCCTA TGCTCAGATG
GTCAAGCGCG TCACCCACAA TCTCGGCTGC GCGCTGCTGT TCGAGCCGGG CCGGATGATC
GTCGGCAATG CCGGCATCCT GGTCGCGCGC GTGATCTATG TGAAGCACGG CGACGGCAAG
ACCTTCGTGA TCATCGATGC GGCGATGAAC GATTTGATCC GGCCGACGCT GTACGAGGCC
TATCACGAAA TTCTGCCGGT GGCGGCCCCC GCGCCCGGCG CCAAGCTGAT CACCGCCGAC
GTCGTCGGCC CGGTCTGCGA GACCGGCGAT TACCTCGCGC TCGACCGCCA ACTGCCGGAG
CTGAAATCCG GCGACCTGAT CGCGATCATG ACGGCGGGCG CCTATGGCGC GGTACAGGCG
TGTACCTACA ACACCCGCGC GCTGGTGCCC GAAGTGCTGG TCAAGGACGA TCAGTACGCG
GTGGTGCGCC CGCGCATCGA GGTCGAGCAA CTGATCGCGC TGGACCGGCC GGCGCCGTGG
CTGTGA
 
Protein sequence
MRHFDYRDGV LHAEGVGLEV LAREVGTPFY CYSTATLERH YRVFSEAFAG TDALVCYAMK 
ANSNQSVLRT LARLGAGADV VSGGELQRAL AAGIPASKIV FSGVGKTEAE LRAALAHDIK
CLNVESEPEL ELLSRLAVET GRTARISIRV NPDVDSGTHA KISTGKSENK FGIPLVHARE
VYARAAKLPG ILISGVDVHI GSQIIDLAPM EAAFRLVAEF VHQLRGDGHT ISHVDFGGGL
GIPYYEDRDA PPEPFAYAQM VKRVTHNLGC ALLFEPGRMI VGNAGILVAR VIYVKHGDGK
TFVIIDAAMN DLIRPTLYEA YHEILPVAAP APGAKLITAD VVGPVCETGD YLALDRQLPE
LKSGDLIAIM TAGAYGAVQA CTYNTRALVP EVLVKDDQYA VVRPRIEVEQ LIALDRPAPW
L