| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0724 |
|---|
| Symbol | |
|---|
| ID | 3910020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 812186 |
|---|
| End bp | 815032 |
|---|
| Gene Length | 2847 bp |
|---|
| Protein Length | 948 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637882616 |
|---|
| Product | formate dehydrogenase, alpha subunit |
|---|
| Protein accession | YP_484346 |
|---|
| Protein GI | 86747850 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.696908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.792249 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCTGG TTCACGAAAC CGATTTCGGC ACGCCGCGCT CGCCGTCCGA GACGATGGTG
ACGCTGACGA TCGACGGCCG CAACGTCAGC GTGCCCGAGG GCACCTCGAT CATGCGCGCC
GCGATGGAGA TCGGCACCGC GATTCCGAAA CTCTGCGCCA CCGACATGGT CGACGCGTTC
GGCTCGTGCC GGCTGTGCCT GGTCGAGATC GACGGCCGCA GCGGCACGCC GGCGTCCTGC
ACCACGCCGG TCGCCGACGG GCTGGTGGTG AAGACCCAGA CCGCGCGGCT GAAGCAGATC
CGCAAAGGCG TGATGGAGCT GTATATCTCC GACCACCCGC TCGACTGCCT GACCTGCTCG
GCCAATGGCG ATTGCGAATT GCAGGACATG GCCGGCGCGG TCGGCCTGCG CGACGTGCGC
TATGGCTATA GCGGCGAGAA GCACCCGAAT CCGGGGCTCG ATGAGTCCAA CCCTTATTTC
ACCTACGATC CGTCGAAATG CATCGTCTGC TCGCGCTGCG TCCGCGCGTG TGAAGAAGTG
CAAGGCACCT TCGCGCTGAC CATCGCCGGT CGCGGCTTCG ACTCGGTCGT CTCACCGGGC
ATGCAGGAGA GCTTCCTCGG CTCGGAATGC GTCTCCTGCG GCGCCTGCGT GCAGGCCTGC
CCGACCGCGA CGCTGAACGA GAAGAGCGTG ATCGAGATCG GCACGCCGGA GCGCTCGGTG
GTGACGACCT GCGCGTATTG CGGCGTCGGC TGCACCTTCA AGGCCGAGAT GCGCGGCGAG
GAAGTCGTCC GCATGGTGCC CTTCAAAGAC GGCAAGGCCA ATCGCGGCCA TTCCTGCGTC
AAGGGCCGCT TTGCCTGGGG CTACGCCAAC CACAAGGAAC GCATCCTCAA CCCGATGATC
CGCGCCAGCA TCAGCGAGCC GTGGCGCGAA GTGAGCTGGG ACGAAGCGTT TGCTTACGCA
GCTTCGGAGT TGAAGCGGAT CCAGGCCACA TACGGCCGCG ATTCGATCGG CGGCATCACC
TCGTCGCGCT GCACCAACGA AGAAACCTTC CTGGTGCAGA AGCTGATCCG CGCCGGCTTC
GGCAACAACA ATGTCGACAC CTGTGCCCGG GTCTGCCATT CGCCGACCGG CTACGGCCTC
TCCACCGCAT TCGGCACCTC GGCCGGCACC CAGGATTTCG ACTCGGTCGA GCACACCGAC
GTGGTGATGC TGATCGGCGC CAATCCGACC GACGGCCACC CGGTGTTCGC CTCGCGGCTG
AAAAAGCGGC TGCGCGCCGG CGCCAAGCTG ATCGTGGTCG ATCCGCGCCG GATCGATCTG
GTGCGCTCGG CGCATGTCGA GGCGGCGCAG CATCTGCCGC TGAAGCCCGG CACCAACGTC
GCGGTGCTGA CGTCGATCGC CCATGTGATC GTCACCGAGG GACTCACCCA CGAGGCCTTC
GTGCGCGAGC GCTGCGACTG GAGCGAATAC GAGCACTGGG CGGCGTTCGT GGCGCAGCCG
GCCAATAGTC CGGAAGCGAC CAGCGCGATG ACCGGCGTCG ATCCGCAGGC GTTGCGCGAG
GCGGCAAGGC TGTACGCCAC CGGCGGCAAC GGCGCGATCT ATTACGGCCT CGGCGTCACC
GAGCACAGCC AGGGCTCGAC CACCGTGATG GCGATCGCCA ACCTCGCAAT GGCCACCGGC
AATCTCGGCC GGCCCGGCGT CGGGGTGAAC CCGCTGCGCG GCCAGAACAA TGTGCAGGGC
GCCTGCGACA TGGGCTCGTT CCCGCACGAA CTGCCGGGCT ATCGCCACAT CTCCAGCGAC
GCGGTGCGCG AGAGCTTCGA GGCGCTGTGG GGCGTGACGC TGAACAGCGA GCCGGGGCTG
CGCATCCCCA ACATGCTCGA CGCCGCGGTC GATGGTTCGT TCAAGGCGCT CTACGTGCAG
GGCGAGGACA TCCTGCAATC CGACCCCAAC ACCAGACACG TCGCCGCCGG GCTCGAAGCG
ATGGAATGCG TCATCGTGCA CGATCTGTTT CTCAACGAGA CCGCGAACTA CGCGCATATT
TTCCTGCCCG GCTCGACCTT CCTGGAGAAG AACGGCACCT TCACCAATGC GGAGCGCCGC
ATCCAGCGCG TCCGCAAGGT GATGACGCCG CGCAATGGGC AGGAGGACTG GGAAGTCACG
CAGCGGCTCG CCAATGCGAT GGGCTTTTCG ATGAGCTACG AGCATCCGTC GCAGATCATG
GACGAGATCG CGGCGCTGAC GCCGACCTTT GCGGGCGTGT CCTACGACCG GCTCGAGCAG
CTCGGCTCGA TCCAATGGCC GTGCAACGAG CGCGCGCCGG ACGGCACGCC GGTGATGCAC
ATCGACGCTT TCGTCCGCGG CAAGGGCAAG TTCGTCATCA CCGAATATGT CGCCACCGAC
GAGCGCACCG GGCCACGCTT CCCGCTGCTG CTGACCACCG GCCGCATCCT GTCGCAGTAC
AATGTCGGCG CGCAGACGCG ACGGACCGCC AATACGGTGT GGCACGACGA GGACCGTCTC
GAAATCCATC CGCACGATGC CGAGCAGCGC GGCGTCAGGG ATGGCGATTG GGTGCGACTC
GCCAGCCGCG CCGGCGAGAC CACGCTGCGC GCGCTGATCA CCGATCGGGT CGCGCCGGGC
GTGGTCTACA CCACGTTCCA CCACCCGGAC ACGCAGGCCA ACGTCGTGAC GACCGAGTAT
TCCGACTGGG CCACCAACTG CCCGGAATAC AAAGTGACGG CGGTGCAGGT GACGCCGTCC
AATGGTCCAT CGGAATGGCA GCGCGACTAT GCCCAGCAGG CGGCCGCCGC TCGCCGGATC
GCGACGCCTG CAGAGGCCGC AGAATGA
|
|---|
| Protein sequence | MALVHETDFG TPRSPSETMV TLTIDGRNVS VPEGTSIMRA AMEIGTAIPK LCATDMVDAF
GSCRLCLVEI DGRSGTPASC TTPVADGLVV KTQTARLKQI RKGVMELYIS DHPLDCLTCS
ANGDCELQDM AGAVGLRDVR YGYSGEKHPN PGLDESNPYF TYDPSKCIVC SRCVRACEEV
QGTFALTIAG RGFDSVVSPG MQESFLGSEC VSCGACVQAC PTATLNEKSV IEIGTPERSV
VTTCAYCGVG CTFKAEMRGE EVVRMVPFKD GKANRGHSCV KGRFAWGYAN HKERILNPMI
RASISEPWRE VSWDEAFAYA ASELKRIQAT YGRDSIGGIT SSRCTNEETF LVQKLIRAGF
GNNNVDTCAR VCHSPTGYGL STAFGTSAGT QDFDSVEHTD VVMLIGANPT DGHPVFASRL
KKRLRAGAKL IVVDPRRIDL VRSAHVEAAQ HLPLKPGTNV AVLTSIAHVI VTEGLTHEAF
VRERCDWSEY EHWAAFVAQP ANSPEATSAM TGVDPQALRE AARLYATGGN GAIYYGLGVT
EHSQGSTTVM AIANLAMATG NLGRPGVGVN PLRGQNNVQG ACDMGSFPHE LPGYRHISSD
AVRESFEALW GVTLNSEPGL RIPNMLDAAV DGSFKALYVQ GEDILQSDPN TRHVAAGLEA
MECVIVHDLF LNETANYAHI FLPGSTFLEK NGTFTNAERR IQRVRKVMTP RNGQEDWEVT
QRLANAMGFS MSYEHPSQIM DEIAALTPTF AGVSYDRLEQ LGSIQWPCNE RAPDGTPVMH
IDAFVRGKGK FVITEYVATD ERTGPRFPLL LTTGRILSQY NVGAQTRRTA NTVWHDEDRL
EIHPHDAEQR GVRDGDWVRL ASRAGETTLR ALITDRVAPG VVYTTFHHPD TQANVVTTEY
SDWATNCPEY KVTAVQVTPS NGPSEWQRDY AQQAAAARRI ATPAEAAE
|
|---|
| |