| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0683 |
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| Symbol | |
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| ID | 3908188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 766782 |
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| End bp | 768671 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637882574 |
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| Product | putative inner membrane protein translocase component YidC |
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| Protein accession | YP_484305 |
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| Protein GI | 86747809 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.902315 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACA ATCGCAACAC CATCCTCGCC GTGATTCTGT CGGGCCTCGT GCTGCTCGGC
TGGCAGTACT TCTTCAACAT CCCGCAGATG GAGAAGCAGC GCGCCGCCCA GCAGGCGCAA
CAGCAGCAGG ACGCGGCCAA GCAGCCGACC CAGCAGGCCC CGGCCGCGAC CACGCCGGGT
GCGCCGAACG CTCCGGCGGC GTCGGCAGCG CCCGGTGCTC CCGGAGCCCC AGGCGCGCCG
GCAGCCCGGC AGTCCGGCAA TGCGCCGGTG GTCAGCCGCG AGGCGGCGAT CGCGGCGTCG
CCGCGGATCA AGGTCGAAAC CCCGCGCCTC GACGGCACGA TTTCGCTGAA GGGCGCGCGG
ATCGACGATC TGTCGCTGAC CCAGTTGCGC GAGACGGTCG ACCCGAAATC GCCGCCGATC
CATCTGTTCT CGCCGTCCGG CGGCGCCAAT CCCTATTATG CCGAATTCGG CTGGGTCGGC
GCGGCGGGCT CCAACGTCAA GCTGCCCGAC CAGAACACGA TGTGGCAGCA GCAAGGCTCC
GGCGCGCTGA CGCCGAGCAG CCCGATCACG CTGACATGGG ACAACGGCGA AGGTCTCACC
TTCCGCCGCC AGATCGCGGT CGACGACCGC TATCTGTTCA CCGTGAAGGA CGACGTCACC
AATGTCGGCA GCAGCCCGGT GACGCTGTAC CCCTACGCGC TGATCTCGCG CCATGGCACG
CCGCATGTCG AGGGCTACTA CATTCTGCAT GAAGGCCTGA TCGGCTATCT CGGCGAGCAC
GGCCTGCAGG AATACGGTTA CGCCAAGATC GACGAAGCCA AGACGGTGGG CTTCAAGGCG
ACCAATGCCT GGATGGGCAT CACCGACAAA TACTGGGCCT CGGCGCTGCT GCCGGACACC
AATGCGCAGC TCCAGGCGCG GTTCTCGTCG AATCAGGTCG GCGCCACCCG CACCTATCAG
ACCGACTATC TCGAAGACGC CAAGACGGTG CCGATCGGCG GCACCGTGAC GGCCAACGCC
CGGCTGTTCG CCGGCGCCAA GGAAGCGCGC GTCGTCGGCA TCAACTTCCC GTTCGCGGGC
CTCGGCGGCT ACAATCAGCA GCTCGGGCTG AACCATTTCG ACCTGCTGAT CGACTGGGGC
TGGTTCTACT TCATCACCAA GCCGATGTTC CTGGCGCTCG ACTTCTTCTT CCATCTGGTC
GGGAATTTCG GCGTCGCCAT CCTGCTGGTG ACGGTGCTGA TCAAGGTGCT GTTCCTGCCG
CTGGCGAACA AATCCTACGC CTCGATGGCC AAGATGAAGG CGATCCAGCC GCAGCTGCTC
GCGCTGAAGG AGCGTCATCC GGACGACAAG GCGAAGCAGC AGCAGGAGAT GATGGAGATC
TACCGCAAGG AGAAGATCAA TCCGGTCGCC GGCTGTCTGC CGGTGCTGCT GCAGATCCCG
GTGTTCTTCT CGCTGTACAA GGTGCTGTTC GTCACCATCG AAATGCGCCA CGCGCCGTTC
TTCGGCTGGA TCCACGATCT GTCGGCGGCG GACCCGACCA ATCTGTTCAA TCTGTTCGGA
CTGCTGCCGT TCGATCCGAC CGCGATCCCG GTGCTCGGCC ACTATTTGGT GCTCGGCGTC
TGGCCGCTGG TGATGGGCTT CACGATGTGG TTCCAGATGA AGCTCAATCC GCAGCCGCCG
GATCCGACGC AGCAGATGAT CTTCGCCTGG ATGCCGGTGA TCTTCACCTT CATGCTGGCG
CACTTCCCGG CCGGTCTGGT GATCTACTGG GCCTGGAACA ACCTGCTGTC GGTGATCCAG
CAGGCCTACA TCATGCGCCG CAACGGCGTG AAGGTGGAGC TGTTCGACAA TCTGAGAGCG
GCCTTCACGA AGAAGAAGAA AGCGGCATAG
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| Protein sequence | MSDNRNTILA VILSGLVLLG WQYFFNIPQM EKQRAAQQAQ QQQDAAKQPT QQAPAATTPG
APNAPAASAA PGAPGAPGAP AARQSGNAPV VSREAAIAAS PRIKVETPRL DGTISLKGAR
IDDLSLTQLR ETVDPKSPPI HLFSPSGGAN PYYAEFGWVG AAGSNVKLPD QNTMWQQQGS
GALTPSSPIT LTWDNGEGLT FRRQIAVDDR YLFTVKDDVT NVGSSPVTLY PYALISRHGT
PHVEGYYILH EGLIGYLGEH GLQEYGYAKI DEAKTVGFKA TNAWMGITDK YWASALLPDT
NAQLQARFSS NQVGATRTYQ TDYLEDAKTV PIGGTVTANA RLFAGAKEAR VVGINFPFAG
LGGYNQQLGL NHFDLLIDWG WFYFITKPMF LALDFFFHLV GNFGVAILLV TVLIKVLFLP
LANKSYASMA KMKAIQPQLL ALKERHPDDK AKQQQEMMEI YRKEKINPVA GCLPVLLQIP
VFFSLYKVLF VTIEMRHAPF FGWIHDLSAA DPTNLFNLFG LLPFDPTAIP VLGHYLVLGV
WPLVMGFTMW FQMKLNPQPP DPTQQMIFAW MPVIFTFMLA HFPAGLVIYW AWNNLLSVIQ
QAYIMRRNGV KVELFDNLRA AFTKKKKAA
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