| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0655 |
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| Symbol | |
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| ID | 3908580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 739032 |
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| End bp | 740672 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637882545 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_484277 |
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| Protein GI | 86747781 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.220841 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACTAA CTCAACGCCT CGAGTTCCGA CAGTCACAGT CGCTGGTGAT GACGCCGCAG
CTGATGCAGG CGATCAAGCT GCTGCAACTG TCGAATCTGG ACCTCGCGAC CTTCGTCGAG
GACGAACTCG AGAAAAACCC CCTGCTGGAC CGGGCCAGTG ACAACGCCGA ACCGCCGGTC
GCCGGCGAGG CAGTGATGGA GCGCGCCGAG GCCAGCGGCG ACGATTTCGG CGGGAGCGAG
AGCAGCGGAG ACGGCTCTGA CTTCTCCGAC GGCGTCGGCA GCGACTCGTT CGAGCCGGGC
GCCGAGGATT GGATGCACCG CGACCTCGGC AGCCGCAGCG AGATCGAGCA GACGCTCGAT
ACCGGCATGG AAAACGTGTT TCCGGAAGAG CCGGCCGAGG CCGCCGCCCG CGCCGCGCAG
GACGCGGCTC CAGCCTCCTA CACCGAATGG GGCGGCGGCG CCTCCAGCGA CGAGGGCTAC
AATCTCGAGG CCTTCGTCGC CGCCGAAACC TCCCTGGCCG ATCGCCTCGC CGAGCAGCTT
GCGGTGGCGC TCACCGCGCC GTCGCAGCGC ATGATCGGCC AATATCTGAT CGACCTCGTG
GATGACGCCG GATATCTGCC GCCCGACCTC GGTGACGCCG CGGAGCGTCT CGGCACCACC
CAGGCCGAAG TCGAAGCCGT CGTCGCCGTT CTGCAGACCT TCGATCCGCC GGGGATCTGC
GCGCGCTCGC TGGCCGAATG CCTGGCGATC CAGTTGCGCG AACTCGACCG GTTCGACCCG
GCGATGCAGG CTTTGGTCGA GAATCTGGAT CTCCTCGCCA AGCGCGACAT CGCCAGCCTC
CGCAAGCTCT GCGGCGTCGA CGACGAGGAT CTCGCCGATA TGATCGGCGA AATCCGCCAT
CTCGACCCGA AGCCGGGTCT GAAATTCGCA TCGTCGCGGG TGCAGACCGT GGTGCCGGAC
GTGTTCGTCC GCCCCGGCCC GGACGGCGGC TGGCTGGTCG AACTCAACAG CGACACGCTG
CCGAAGGTGC TGGTCAACCA GTCCTATTAC TCCGAACTGT CGAAGACGAT CCGCAAGGAC
GGCGACAAGT CGTACTTCTC CGACTGCCTG CAGAACGCCA CCTGGCTGGT GCGCGCGCTC
GACCAGCGTG CCCGCACCAT CCTGAAAGTG GCGACCGAGA TCGTGCGCCA GCAGGACGGC
TTCTTCACCC ACGGCGTCGC GCATCTGCGG CCGCTGAATC TGAAGGCGGT GGCCGACGCG
ATCCAGATGC ACGAATCCAC GGTATCGCGC GTGACCGCCA ACAAATACAT GGCGACCAAT
CGGGGCACGT TCGAACTCAA GTATTTCTTT ACCGCTTCGA TCGCTTCCGC CGACGGCGGC
GAGGCGCATT CGGCCGAAGC CGTGCGCCAT CACATCCGGC AGTTGATCGA CGGCGAAGAG
CCGACCGCCA TCCTGTCGGA CGACACCATC GTCGAACGGC TGCGCGAAGC CGGCATCGAG
ATTGCGCGCC GCACCGTCGC GAAGTATCGC GAGGCGATGC GGATCCCGTC GTCGGTGCAG
CGGCGGCGCG ACAAGCAGAG CATGCTCGGC ACGGCCCTGG CGGCGCCCGC CGATCGGTCC
CGCGACACCG CTCCGGCTTG A
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| Protein sequence | MALTQRLEFR QSQSLVMTPQ LMQAIKLLQL SNLDLATFVE DELEKNPLLD RASDNAEPPV
AGEAVMERAE ASGDDFGGSE SSGDGSDFSD GVGSDSFEPG AEDWMHRDLG SRSEIEQTLD
TGMENVFPEE PAEAAARAAQ DAAPASYTEW GGGASSDEGY NLEAFVAAET SLADRLAEQL
AVALTAPSQR MIGQYLIDLV DDAGYLPPDL GDAAERLGTT QAEVEAVVAV LQTFDPPGIC
ARSLAECLAI QLRELDRFDP AMQALVENLD LLAKRDIASL RKLCGVDDED LADMIGEIRH
LDPKPGLKFA SSRVQTVVPD VFVRPGPDGG WLVELNSDTL PKVLVNQSYY SELSKTIRKD
GDKSYFSDCL QNATWLVRAL DQRARTILKV ATEIVRQQDG FFTHGVAHLR PLNLKAVADA
IQMHESTVSR VTANKYMATN RGTFELKYFF TASIASADGG EAHSAEAVRH HIRQLIDGEE
PTAILSDDTI VERLREAGIE IARRTVAKYR EAMRIPSSVQ RRRDKQSMLG TALAAPADRS
RDTAPA
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