| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0629 |
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| Symbol | |
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| ID | 3908322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 712274 |
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| End bp | 715759 |
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| Gene Length | 3486 bp |
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| Protein Length | 1161 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637882518 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_484251 |
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| Protein GI | 86747755 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.590503 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGCC CGCGCAGCAT TCCCGATCAG GCGCGCGAGC GGCAGATCCT CGCCTCCGAT
CCGTCCGCCT CGGTGTTCGT CTCGGCCAAT GCCGGCTCCG GCAAGACCCA CGTCCTTGTC
CAACGGGTGA TCCGGCTGCT GCTCGACGGC GTGCCGCCGG AGCGCATCCT GTGTATCACC
TTCACCAAGG CCGCCGCCGC CAACATGGCG GAGCGCGTCT TCACCACGCT CGGCCGCTGG
GTGACGCTCG ACGACGCCGC GCTGACGGCC GCGATCAAGG CGACTGGTAT CAAGTCGGTC
GGGCCGTCTC TTTTGGCGCA GGCGCGAAAA CTGTTCGCCT GCGCGCTGGA GACGCCGGGC
GGGCTCAAGG TGCAGACCAT CCACGCGCTG TGCACCCGGC TGCTGCAGCA GTTTCCGTTC
GAGGCCAATG TGCCGGCGCG GTTCAGCGTC CTGGACGATC GCGACCAGGC CGAATTGATG
CAGCGCGCCA GCCTGGCGGT GTTGCTGCAG GCCGCCGCCG CGCCGGACAG CGCGGCGGGA
CGCGCGCTGG CGTTGGCGAT GACCAGCGCG GCGGATATCA CCTTCCGCGA GGTGGTGCAG
GAAGCCTGCA TGAGCCGCGA TCGGTTTCTC GGCTGGATCG CCCAGGCCGG CGGCGTCGAC
GGCGCGATGG CGCAGCTCTC GGTCACCCTC GGCGTCGCGG CGGAGGATGA TTGCGACGCC
GTCGAGCGCG ACATCGTCGA CGGCCCGCAT CTGCCGCGCG CGCGATGGAC GGACGGCGCC
ACCATATTCG ACGGCGGAAG TAAGACGGAT CACGATCAGG CGCAGCGGCT GCGCGATGCG
CTGGCGGCAA GCGACACCGC GCAGCTCGAG AAGTATCTCG AACTGTTCTT CACCAAGGAA
GCCAAGCTGC GCAAAAGCTT CGCGACTAAG AAGATCGCCG ACCCCATGCC CGGGTTCGCT
GAGGATCTCA AGCGCGAGGG CGCGCGGCTC GAAGGCCTGC TGGAGCGTCG CCGCGCGCTG
CTGATGCGCG AGCGGACGCG GGCGCTGCTG GTGATCGCCT TCGACGTCGC CGAGCGCATC
CGCCGCGAAA AGCAGGAACG CGGGCTGCTC GATTACGACG ATCTGATCGA CAGGACGCTG
CAGATGCTCG ACAGCGGCGC GTCGAGCTGG GTGCATTTCA AGCTCGACCG CGGCGTCGAT
CACGTGCTGA TCGACGAGGC GCAGGACACC AGCCCTAAGC AATGGGACAT CGTCGCGCAT
CTGATCGCCG AATTCACCGC GGGGGAGGGC GCGCGCGAAG GAATCAAGCG CACGGTGTTC
GCGGTCGGCG ACGAGAAGCA GTCGATCTTC TCGTTTCAGG GCGCGGTGCC GAAGGAATTC
GCCGAGCGCC GCGATCTGTT GCAGCGCCGT TTCCACGGCG CCGGGCTCGC CTTCGAGAAG
GTCAGTTTCA ACTACTCGTT CCGCTCCGGC GCCACCATCC TGCAATCGGT CGATCACGTG
TTCCGCGATC CCGACATCTA TCGCAGCATC CACGCCGATA CGAGCTATCC GCTGCACGAG
GCGCTGACCG ACGCCGGCCC CAGCCTGATC GATCTGTGGC CGCTGGAAGT GCCGGACGAC
AAACAGGAGA TCGAAGGCTG GCGCGCGCCG TTCGATGCGG TGTCGGAGAC CAGCCCCGAG
GTGCGGCTGG CCGACAAGGT GCGGGCCGAG ATCGCGTCGC TGATCGCAAG CGGCACGATG
ACGGGGCCGC GCGACGACCG TCGCCGGCTG CGCTATGGCG ACGTGCTGGT GCTGGTGCGC
CGGCGCGGTT CGGCGTTCGA TGCGGTGATC CAGGCCTTGA AGCGCGGCGG GATTCCGGTC
GCCGGCGCCG ACCGGCTGAA GCTGACCGAG CACATCGCCA TCATCGACCT GATGAATCTC
GCCGATGCAC TGCTGCTGCC GCAGGACGAT CTGGCGCTGG CGGTGGCGCT GAAGAGCCCG
CTGTTCGGGT TCGACGACGA CGATCTGTTC CGGCTGGCGT GGCGGCGCAA GGGCTCGCTG
CGCGCCGCGC TGCGCGACAA GGCGGCCGGC GACGCGAAAC TAACAGCCGT GTTGCATCGT
CTCGATACCT GCGCGGAGCA GTCGCAGGCC GAGACGCCGT TCGGCTTCTA CGCCTGGCTG
CTCGGCGGCG ACGGCGGCCG CGCCCGCATC CTGCGCCGGC TCGGGCCGGA GGCCAATGAC
GCGCTCGACG AGTTTCTCGA ACTGGCGCTG AGTTTCGAGC GCAAGCAGCC GCCGTCGCTG
CAGGGCTTCG TCGCCTGGCT GCGCGCCGCT GACACCGAGA TCAAGCGCGA CATGGAAATC
TCGCGCGACG AAGTCCGCGT CATGACCGTG CACGGCGCCA AGGGGCTGGA AGCGCTGGTG
GTGTTCCTGG TCGATACCAC CTCGTCGCCG GCCGATAGCC AGCGGCTCAA TCTGATCCGA
TTGCCTGGCG GCAATGCGCA GCCGGGCGCG CCGTCTGCGA TGGTGTGGGC CGGCCGCAAG
GCCGATGATC CGCGCGCGGT CGAGCAGGCC CGCGCCGCGA TGATCAGCGA CACCGAGGAC
GAGTATCGCC GGCTGCTCTA TGTGGCGATG ACGCGCGCGG CGGACCGGCT GATCGTCGGC
GGCTGCATGC CCGGCAATCG CAACGATGTC CGCGCGCTGT CCTGGTACGA TCTGATCAGC
AAGGGGCTGG AGAATTCAGG TCTGGCGATG CGCGCGGTGC CGCCGCCGGA CGGCGCGGTA
AAGCGCTATT GCCGTCCCGA GGACGAGGTC GTCGAAACCG CCGCGCCGGA CGAAACGCCG
GCCGCCGCGC CGCTGATCCT GCCGAACTGG CTGCACCGAT CGGCGCCGGC GCTGCGCGCG
CCCGACAACC TGCTGCGCCC GTCCGATGCC CACGACGCCG ATCACCGTCG GCTGCGCCGC
GGCGAATCCG AGGCGCAGCG CCAGCGCGCG CTGCAGCGCG GCACGCTGGT GCACCGTCTG
CTGCAGTCGC TGCCCGATCT GCCGGCGGAT GCGCGCGCCT CCGCCGCGGC GCGTTATCTC
GCCCGCAATG CGAAGGATTG GAACGACGAG GACCGCGACG CGCTCGCCGC GCGGGTGCTG
CAAGTGATCA CCGCGACGCG CTTTGCGGTG GTGTTTGCCC CGGGTAGCCG CGCCGAGGTG
CCGATCGCCG GCCGGCTGCA GCGCCATGGC GAGCCGGTGC TGGTCTCGGG CCAGATCGAC
CGGCTGGTGG TGACCGACGC CGAGGTCCTG ATCGTCGACT ACAAGACCAA CCAGGTGCCG
CCGCGCAGCC TCGCCGAAAC GCCGCCAGCC TATCTGCGCC AGCTCGCGCT GTATCGGGCG
GTGCTCGCCA GGCTTTATCC CCAGCGTCCC GTCAGGGCCG CGCTGCTGTG GACAGAAGCG
CCTGAAATCA TGGAGATTTC AGCCTCTGCG CTGGACGCGG AGCAGGCCGC GTTGACGGTG
GCGTGA
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| Protein sequence | MSGPRSIPDQ ARERQILASD PSASVFVSAN AGSGKTHVLV QRVIRLLLDG VPPERILCIT
FTKAAAANMA ERVFTTLGRW VTLDDAALTA AIKATGIKSV GPSLLAQARK LFACALETPG
GLKVQTIHAL CTRLLQQFPF EANVPARFSV LDDRDQAELM QRASLAVLLQ AAAAPDSAAG
RALALAMTSA ADITFREVVQ EACMSRDRFL GWIAQAGGVD GAMAQLSVTL GVAAEDDCDA
VERDIVDGPH LPRARWTDGA TIFDGGSKTD HDQAQRLRDA LAASDTAQLE KYLELFFTKE
AKLRKSFATK KIADPMPGFA EDLKREGARL EGLLERRRAL LMRERTRALL VIAFDVAERI
RREKQERGLL DYDDLIDRTL QMLDSGASSW VHFKLDRGVD HVLIDEAQDT SPKQWDIVAH
LIAEFTAGEG AREGIKRTVF AVGDEKQSIF SFQGAVPKEF AERRDLLQRR FHGAGLAFEK
VSFNYSFRSG ATILQSVDHV FRDPDIYRSI HADTSYPLHE ALTDAGPSLI DLWPLEVPDD
KQEIEGWRAP FDAVSETSPE VRLADKVRAE IASLIASGTM TGPRDDRRRL RYGDVLVLVR
RRGSAFDAVI QALKRGGIPV AGADRLKLTE HIAIIDLMNL ADALLLPQDD LALAVALKSP
LFGFDDDDLF RLAWRRKGSL RAALRDKAAG DAKLTAVLHR LDTCAEQSQA ETPFGFYAWL
LGGDGGRARI LRRLGPEAND ALDEFLELAL SFERKQPPSL QGFVAWLRAA DTEIKRDMEI
SRDEVRVMTV HGAKGLEALV VFLVDTTSSP ADSQRLNLIR LPGGNAQPGA PSAMVWAGRK
ADDPRAVEQA RAAMISDTED EYRRLLYVAM TRAADRLIVG GCMPGNRNDV RALSWYDLIS
KGLENSGLAM RAVPPPDGAV KRYCRPEDEV VETAAPDETP AAAPLILPNW LHRSAPALRA
PDNLLRPSDA HDADHRRLRR GESEAQRQRA LQRGTLVHRL LQSLPDLPAD ARASAAARYL
ARNAKDWNDE DRDALAARVL QVITATRFAV VFAPGSRAEV PIAGRLQRHG EPVLVSGQID
RLVVTDAEVL IVDYKTNQVP PRSLAETPPA YLRQLALYRA VLARLYPQRP VRAALLWTEA
PEIMEISASA LDAEQAALTV A
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