Gene RPB_0616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0616 
Symbol 
ID3908309 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp694249 
End bp695250 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content67% 
IMG OID637882505 
Productglycolate reductase 
Protein accessionYP_484238 
Protein GI86747742 
COG category[C] Energy production and conversion
[R] General function prediction only
[H] Coenzyme transport and metabolism 
COG ID[COG1052] Lactate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.164009 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.739165 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGTGA AGAAAAAGCC TCTGGTCGTC GTCACCCGCA AGCTTCCGGA CTCGATCGAA 
ACCCGGATGC GTGAACTGTT CGACGCGCGG CTCAATCTCG ACGACGCGCC GATGTCGGCC
GAGCAGCTCG CCGACGCCGC GCGCACCGCC GACGTGCTGG TGCCGACCGT CACCGATTCG
ATCACCAGCG AGATGTTGAA TCAGCCCGAC TGCAAGCTGC GGCTGATCGC GAATTTCGGC
AACGGCATCG ACAATATCGA CGTCGCCGCC GCCCATGCCC GCGGCATCAC CGTCACCAAC
ACGCCGAAGG TGCTCACCGA AGACACCGCC GACATGACGA TGGCGCTGAT TCTCGCGGTG
CCGCGCCGGC TGATCGAAGG CGCCGCATTG CTCACCGACG GCGGCGAATG GCCCGGCTGG
TCGCCGACCT GGATGCTCGG CCGCCGTCTC GGCGGCAAGC GCCTCGGCAT CATCGGCATG
GGCCGGATCG GCCAGGCGGT GGCGCGCCGC GCCCGCGCCT TCGGGCTGCA GATCCATTAT
CACAACCGCA AGCCGGTGGC GCCGCGGATC GCCGACGAAC TCGGCGCGAC CTATTGGGAT
TCGCTCGACC AGATGCTGGC GCGGATGGAC ATCATCTCGG TGAACTGTCC GCACACGCCC
GCGACCTTCC ATCTCTTGTC GGCGCGCCGT CTGAAGCTGG TCCGCAAGGA CGCCTTCATC
GTCAACACCG CGCGCGGCGA GGTGATCGAC GAGGAGACGC TGACCCGGCT GATCGAGAGC
GGCGACATCG CCGGCGCCGG CCTCGACGTC TACGAGCACG AGCCCGCGGT CAATCCGAAG
CTGGTGCGCC TCGCCAAGCA CGGCAAGGTG GTGCTGCTGC CGCATATGGG CTCGGCGACG
ATCGAAGGCC GCGTCGAGAT GGGCGAGAAG GTGATCATCA ACATCCGCAC CTTCCTCGAC
AACCACAAGC CGCCGGATCG CGTGCTGCCG GGGATGCTGT AG
 
Protein sequence
MSVKKKPLVV VTRKLPDSIE TRMRELFDAR LNLDDAPMSA EQLADAARTA DVLVPTVTDS 
ITSEMLNQPD CKLRLIANFG NGIDNIDVAA AHARGITVTN TPKVLTEDTA DMTMALILAV
PRRLIEGAAL LTDGGEWPGW SPTWMLGRRL GGKRLGIIGM GRIGQAVARR ARAFGLQIHY
HNRKPVAPRI ADELGATYWD SLDQMLARMD IISVNCPHTP ATFHLLSARR LKLVRKDAFI
VNTARGEVID EETLTRLIES GDIAGAGLDV YEHEPAVNPK LVRLAKHGKV VLLPHMGSAT
IEGRVEMGEK VIINIRTFLD NHKPPDRVLP GML