Gene RPB_0590 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0590 
Symbol 
ID3908283 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp662304 
End bp663710 
Gene Length1407 bp 
Protein Length468 aa 
Translation table11 
GC content69% 
IMG OID637882479 
Product(dimethylallyl)adenosine tRNA methylthiotransferase 
Protein accessionYP_484212 
Protein GI86747716 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[TIGR00089] RNA modification enzyme, MiaB family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.632056 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCCGC CGCGCAAGCT GCACATCAAG TCCTATGGCT GCCAGATGAA CGTCTACGAT 
GCCCAGCGCA TGGTCGACGT GCTGGCGCCG GAAGGCTTCG TCGAGACCGC GAGCGTGGAC
GACGCCGATC TGGTGATCCT CAACACCTGC CACATCCGCG AAAAGGCCTC CGAGAAGGTG
TTTTCCGAGC TCGGCCGGCT GCGGCTGGCG CGTGACGAGG CGTCGCGCGA TGGCCGGCGG
ATGCAGATCG TCGTCGCCGG CTGCGTCGCC CAGGCCGAGG GCGACGAGAT CGTCCGCCGC
CAGCCCGCCG TCGATGTCGT GGTCGGCCCG CAGAGCTATC ACCATCTGCC GCGCCTATTG
GCGCAGGCGG CGCAGACCGG CCGGGCGCTG GAGACCGAGT TCCCGATCGC CGACAAATTC
GGCTTCCTGC CGCAGCCGCA GCCCGAGGCG ATCCGGGCGC GCGGCATCTC GGCTTTCGTC
ACCGTGCAGG AAGGCTGCGA CAAGTTCTGC ACCTTCTGCG TGGTGCCTTA TACCCGCGGC
GCCGAGGTCT CGCGCCCGGT GGCGGCGATC CTCGCCGACG TCGAACGGCT CGCCGACCAC
GGCGTCCGCG AGCTCACCCT GATCGGCCAG AACGTCAACG CCTATCACGG CGACGGGCCG
GACGGCCGGC CCTGGACGCT CGGCCGCCTG CTGCAGCGGC TGGCCGCGGT TCCCGGCATC
GTCCGGCTGC GCTATTCGAC CAGCCATCCC AACGACGTCG ACGACGACCT GATCGCGGCG
CATCGCGACC TCGACGCGCT GATGCCGTTC GTGCATCTGC CGGTGCAGTC GGGCTCGGAC
CGGATTCTGG CGGCGATGAA CCGCAAGCAT ACGGCTGCGG ATTATCGCCG GGTGATCGAC
CGGTTCCGCG CGGTGCGGCC GGAGATCGCG TTTTCGTCGG ATTTCATCGT CGGATTCCCC
GGCGAGACCG ATGCCGATTT CGAAGCGACG CTCGCACTGG TCACACAAAT CGGCTACGCT
GGTGCGTATT CGTTCAAATA TTCGCCGCGG CCCGGCACGC CCGCGGCGGA GATGCCGGAG
ATGGTGCCCG CAGCGGTGAT GGACGAACGT TTGGAGCGGC TTCAGCAAGT GATCGACGCT
CAGCAATCGG CCTTCAACAG GGCCGCGATC GGCCGGACCG TCGACGTGCT GTTCGAGCGC
GCCGGGCGCA AGCCGGGCCA GATCGTCGGC CGCACCGCCT ATCTGCAGCC CGCCCACGTG
TTCCCACCCG CCGGGATGGC GCCCGACAGT CTCGTCGGGC AGATCCTCCC GGTCCGGGTC
GACAGCCTCG AGCGTTACAG CCTGCTCGGC GAACTGGCGG CCACGCCGCC GCGGCATGCT
CGTCCTCTGG CCGCCACAGG AGCCTGA
 
Protein sequence
MAPPRKLHIK SYGCQMNVYD AQRMVDVLAP EGFVETASVD DADLVILNTC HIREKASEKV 
FSELGRLRLA RDEASRDGRR MQIVVAGCVA QAEGDEIVRR QPAVDVVVGP QSYHHLPRLL
AQAAQTGRAL ETEFPIADKF GFLPQPQPEA IRARGISAFV TVQEGCDKFC TFCVVPYTRG
AEVSRPVAAI LADVERLADH GVRELTLIGQ NVNAYHGDGP DGRPWTLGRL LQRLAAVPGI
VRLRYSTSHP NDVDDDLIAA HRDLDALMPF VHLPVQSGSD RILAAMNRKH TAADYRRVID
RFRAVRPEIA FSSDFIVGFP GETDADFEAT LALVTQIGYA GAYSFKYSPR PGTPAAEMPE
MVPAAVMDER LERLQQVIDA QQSAFNRAAI GRTVDVLFER AGRKPGQIVG RTAYLQPAHV
FPPAGMAPDS LVGQILPVRV DSLERYSLLG ELAATPPRHA RPLAATGA