| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0589 |
|---|
| Symbol | |
|---|
| ID | 3908282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 661554 |
|---|
| End bp | 662207 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637882478 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_484211 |
|---|
| Protein GI | 86747715 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCTGCG ACCTCGTCAT CTTCGATTGC GACGGCGTGC TGGTCGACAG CGAAGTGATT
TCCTGCCGCG TCCATGCCGA AACGCTGACC CGTCACGGCT ATCCGATCAC CACCGAACAG
GTCGCCGAGC GCTTCCTCGG CCGCTCCGGC CGCGAGGCGC GGCGTGAGAT CGAGGCCGAG
CTCGGCCGCG CCTTCGACGA CGCGCTCGAG GCGCAACTGG TCGCCGATGT GCTGCGCAGC
TTCGCCGAAA GCCTCGAACC GATCCCCCAC ATCAACGAGG CGCTCGGCGC GCTCGCGCAG
CCGGTCTGCG TCGCCTCCAG CGGCACGCTG GAGCGCATCG CCTTCGCGCT GACCCGCACC
GGCCTGCACG CGCGCTTCGC GCCGCATCTG TTCTCCGCCG AGCAGGTCGA GAGCGGCAAG
CCGGCGCCCG ACCTGTTTCT GCATGCGGCG CGGCAGATGG GCGTGGCGCC GGCGCGCTGC
GTGGTGATCG AGGACAGCGT GCCGGGCATC CTCGGCGCGA CGGCCGCCGG CATGACGGTG
CTGGGCTTCG TCGGCGGCAG CCATTGCGGG CCCGGCATGG CGGCGCGGCT GACCGCCGCC
GGGGCCGCGA CGGTATTCGC AGATATGCGG CAACTTCCTG AATTAATTCG ATAA
|
|---|
| Protein sequence | MSCDLVIFDC DGVLVDSEVI SCRVHAETLT RHGYPITTEQ VAERFLGRSG REARREIEAE
LGRAFDDALE AQLVADVLRS FAESLEPIPH INEALGALAQ PVCVASSGTL ERIAFALTRT
GLHARFAPHL FSAEQVESGK PAPDLFLHAA RQMGVAPARC VVIEDSVPGI LGATAAGMTV
LGFVGGSHCG PGMAARLTAA GAATVFADMR QLPELIR
|
|---|
| |