| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0580 |
|---|
| Symbol | |
|---|
| ID | 3908273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 652169 |
|---|
| End bp | 653899 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637882469 |
|---|
| Product | AMP-binding domain protein |
|---|
| Protein accession | YP_484202 |
|---|
| Protein GI | 86747706 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.566618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.942666 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCACGGCG AGGAAACCAA GGACGTGATC GACAAAGCTC CCGATAAAGC TCCCAGCTAT
GTCTGCGGCG TCTCCGACGC GCCGCTGCTC GGCATCACCA TCGGGCAGGC GCTGGATCTG
GCGGCGCAGC GTTGGCCGGA CCGCGAGGCG CTGGTGTCGC CGAGCCACGA CGTGCGCTGG
AGCTGGCGCG AGTTCGCGCA ACGCGTCGAT GCGCTGGCGG CGGGCTTCCT GGCGCTCGGG
CTGGAGCGCG GCGCGCGCAT CGGCGTGTGG TCGATGAACC GGCCGGAATG GACGCTGACG
CAATTCGCCG CCGCCAAGGC CGGCATGATC CTCGTCACCA TCAATCCGGC CTATCGGCTG
AGCGAGCTCG AATTCGCCCT CGCCAAGGTC GGCTGCGCCG CCTTGGTCAC CGCCACCGCG
TTCAAGACCT CGGCCTATAT GGAGATGCTG AATACGCTGA TCCCGGAGCT TGCGAAATCG
CAGCCCGGCG CGCTGCAGTC GGCCAGGCTG CCGCAGTTGC GCGCGGTGAT CCAGATCGGC
GGCCCGAAAT GCCCGGGCAC GCTCGCCTTC GACGAGGTCG CCACGATGGG CGGCGACCGG
CATCGCCAGG CGATCGCGCA GCTCGCCGCC GAATTGCAGT TCGACGACGC CGTCAACATC
CAGTTCACCA GCGGCACCAC CGGCTCGCCC AAGGGCGTGA CGCTGACGCA TCACAACATC
CTCAATAATG GTTACTTCGT CGGCCGCGCC ATGAAGCTGA CCGAGCAGGA CCGGATTTGC
ATTCCGGTGC CGCTGTATCA TTGCTTCGGC ATGGTGATGG GCAATCTCGC CTCGGTCACC
TGTGGCGCCG CCATGGTGTA TCCCGGCGAG GGTTTTGACC CGCTGGCGAC GCTGCAGACC
GCGTCGTCGG AGAAATGCAC CGCGCTGTAC GGCGTGCCGA CGATGTTCAT CGCCGAACTC
GATCATCCGG ACTTCGCCAG CTTCGATCTG TCGTCGCTGC GCACCGGCAT CATGGCGGGC
GCGCCGTGCC CGGTCGAAGT GATGCGCCGC GTCAACGACC AGATGAACAT GCGCGAGGTG
ACGATCGCCT ACGGCATGAC CGAGACCAGC CCGGTCAGTT TCCAGAGCGC GGTCGACGAT
CCGGAGGAAC GTCGCGTCTC CACCGTCGGC CGCATCCATC CGCATGTCGA GGTCAAGGTG
GTCGATCTCG AAGGCCGCAT CGTGCCGCGC GGGGTGCGCG GCGAACTCTG CACCCGCGGC
TACAGCATCA TGCTCGGCTA TTGGGACGAG GCGGAGAAGA CCGCCGACGT GCTCGACGCC
GCCGGCTGGA TGCACACCGG CGATCTCGCG GTGATCGACG ACGAAGGCTT CTGCAACATC
GTCGGCCGCA TCAAGGACAT GGTGATCCGC GGCGGCGAGA ATCTGTATCC GCGCGAGATC
GAGGAATTCC TGTATCGCCA TCCCAAGATC CAGGACGTGC AGATCTTCGG CGTCGCCGAC
AGTCGCTACG GCGAGGAGCT GTGCGCCTGG GTCCGCGTCC GTCCCGGCGA GACGCTGACC
GCCGACGACA TCCGCGGCTT CTGCCAGGGC CAGATCGCCC ACAACAAGAT CCCGCGCTAC
GTCGAATTCG TCGACGAATT CCCGATGACC GTCACCGGCA AGATCCAGAA ATTCGTGATG
CGCGAGAAGG TCGAGGCCAA GCTCGGACTG AAGGCGGCGA AGACGGCGTG A
|
|---|
| Protein sequence | MHGEETKDVI DKAPDKAPSY VCGVSDAPLL GITIGQALDL AAQRWPDREA LVSPSHDVRW
SWREFAQRVD ALAAGFLALG LERGARIGVW SMNRPEWTLT QFAAAKAGMI LVTINPAYRL
SELEFALAKV GCAALVTATA FKTSAYMEML NTLIPELAKS QPGALQSARL PQLRAVIQIG
GPKCPGTLAF DEVATMGGDR HRQAIAQLAA ELQFDDAVNI QFTSGTTGSP KGVTLTHHNI
LNNGYFVGRA MKLTEQDRIC IPVPLYHCFG MVMGNLASVT CGAAMVYPGE GFDPLATLQT
ASSEKCTALY GVPTMFIAEL DHPDFASFDL SSLRTGIMAG APCPVEVMRR VNDQMNMREV
TIAYGMTETS PVSFQSAVDD PEERRVSTVG RIHPHVEVKV VDLEGRIVPR GVRGELCTRG
YSIMLGYWDE AEKTADVLDA AGWMHTGDLA VIDDEGFCNI VGRIKDMVIR GGENLYPREI
EEFLYRHPKI QDVQIFGVAD SRYGEELCAW VRVRPGETLT ADDIRGFCQG QIAHNKIPRY
VEFVDEFPMT VTGKIQKFVM REKVEAKLGL KAAKTA
|
|---|
| |