| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0113 |
|---|
| Symbol | |
|---|
| ID | 3909700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 123314 |
|---|
| End bp | 124093 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637881995 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_483736 |
|---|
| Protein GI | 86747240 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.886287 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTGAAC GCGTGACGTT GATAACGGGG GCATCGGCTG GCATCGGCAC GGAGCTGGCG
CGCATTTTCG CGGCAAATGC TCACAGAGTG GCCTTGGTGG CGCGACGCGC CGACCGGCTC
GAGGCGCTGG CTGCGGAAAT CACGGCCAAG GGCGGCAAGG AACCGATCAT CATCGTCTGC
GATCTGGCGA AGCCCGAGGC GGTCGACGAG ATCGTGGCCC GGCTGACTGC GGCCGGGGTC
GAGGTCGAGT ACCTCGTCAA CAATGCCGGC TATGGCCTGT TCGGCCGCGC CGCGGAGATC
GACCGCGAGG ATCAGCTCGG CATCATCGAC GTCAATATCC GCGCGCTGAC CGACCTGTCG
CTGCGCTTCG CCGACAGCGT CGCGAAACTG CGCGGCGGCA TCCTCAACGT CGCGTCGATC
GCCAGCTTCC TGCCGGGGCC CGGCATGGCG GTGTACTATG CCTCCAAGGC CTATGTGCTG
TCGCTGAGCG AGGCGCTGCA TCAGGAACTG GGCAAGAAGG GCGTCAGGGT CACGGCGATC
TGTCCTGGGC CGGTGTCGAC CGAATTCCAG TCGCGCGCGG GCTTCGAGCC CGGCTTCGAT
TCGGCGGTGC TCAACGTCTC GCCCGCCGAG GTCGCCCGCC AAGGTTATCA GGGGCTGATG
AACAACAGGC GGCTGGTGTT GCCGGGCCTC GGCGTCAAGA TCGTGCCGTT CCTGCTGCGA
TTCTTCCCGC GCGGCTTCAT TCTGGCCGCG GTCGGCGGCT ATCAGCAGCG GCAGCGCTGA
|
|---|
| Protein sequence | MTERVTLITG ASAGIGTELA RIFAANAHRV ALVARRADRL EALAAEITAK GGKEPIIIVC
DLAKPEAVDE IVARLTAAGV EVEYLVNNAG YGLFGRAAEI DREDQLGIID VNIRALTDLS
LRFADSVAKL RGGILNVASI ASFLPGPGMA VYYASKAYVL SLSEALHQEL GKKGVRVTAI
CPGPVSTEFQ SRAGFEPGFD SAVLNVSPAE VARQGYQGLM NNRRLVLPGL GVKIVPFLLR
FFPRGFILAA VGGYQQRQR
|
|---|
| |