| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0100 |
|---|
| Symbol | |
|---|
| ID | 3909686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 107004 |
|---|
| End bp | 108446 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637881981 |
|---|
| Product | TRAP transporter solute receptor TAXI family protein |
|---|
| Protein accession | YP_483723 |
|---|
| Protein GI | 86747227 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCA AGCGACTATT CGCCCGGTCG ATGGACGAGC CCGAGCCGGT GGACCCTTTG
CTGCATATGT CTGCGCGCCC GGTGCGACGC AAGACGACGC TGATTTCGCT GGCCGCGATC
CTGGCGCTGG TCGGCGCCAT CAGTGCTGCG TATTATTTCG CGATGCGGCC GACGACGCTG
AAGATCGCCG TCGGTCCGCA GGCCAGCGAC GATCTGCGGC TGATCCAGGC GCTGGCGCAG
GCGTTCTCGC GCGAGCGCAA CATCGTCCGG ATGCGGCCCA TCGTCACCGA CGGCCCGGCC
GCCAGCGCCG CGGCGCTGAA ATCAGACACC ACCGATCTTG CGGTGATCCG CGGCGATCTG
CCGGTGCCGC GCAACGCCCG CTCGGTCGCG GTGCTGCACA AGAACGTCGC CGTGCTGTGG
GCGCCCGGCC GGCCCGCGAG CGGCAAACGC AGGAAAGCCG CTGTCGCCGG GGTCACTACC
ATCACCCAGC TGGTCGGCAA GCGCGTCGGC GTGATCGGCC GCACCGAAGC CAATGCGGGG
CTGCTCGCGG TGATCCTGCG CCAATACGGC ATCGACCCCG CCAAGGTCGA GAGCGTGCAG
CTCACCGCGG CCGACGTCGC AGAGGCGGTG CGGACCGGCA AGGCCGACGC GTTTCTCGCG
GCCGGACCGC TCAACAGCAA GGTGATCGGC GAGGCTTTGG CGGCCACTGC GAGTTCCGGC
CGGGAGCCGG TGTTCCTCGG CATCGATTCG TCCGAAGCGC TGGCCGCCAA CCATCCGTCG
TATGAATCGG CGTCGATCCC CGCCGGCGCC TTCGGCGGCG CCCCGGCGCG GCCGGGCGAC
GACGTCAAGA CCATCAGCTT CTCGCATTAC ATCGTGGCGC GCGACGGCGT CTCCGACGCC
ACCATCGCGA GTTTCACCCA ACAATTGTTC ACGGCGCGCC AGACCGTGAT GACGGAGAAT
CCGCTGGCCG CGAAGATCGA GACGCCCGAC ACCGACAAGG ACGCGGTGAT CCCGGTGCAG
GCGGGTGCCG CTGCCTATGT CGACGGCGAG CAGCGCAGCT TTCTCGACCG CTACAGTGAC
CTGATCTGGT TTTCGCTGAT GGGGCTGTCG GCGACCGGCT CGCTCGGCGC CTGGTTCGCG
AGCTATCTGC GGAAAGACGA ACGCAACACC AACGCCTCGC AGCGCGACCG GCTGCTCGAC
ATGCTGGCGG CGGCGCGGCG CTGCGACGCG CAGGACGAAC TCGACGCGAT GCAGACCGAG
GCCGATGCGA TCCTGCGCGA CGCGCTGAAC TGCTACGAGA ACGGCGCGAT CGACAGCGCG
GCGCTGACCG CCTTCAGCAT CGCGCTGGAG CAGTTCCACA ACGCCGTGGT CGATCGCAAG
ATGCTGCTGG CGGCGATCCC GCCGGCGCCA CCGATCCGCC CGGCGCGGCC GCAGGTGGTG
TGA
|
|---|
| Protein sequence | MDFKRLFARS MDEPEPVDPL LHMSARPVRR KTTLISLAAI LALVGAISAA YYFAMRPTTL
KIAVGPQASD DLRLIQALAQ AFSRERNIVR MRPIVTDGPA ASAAALKSDT TDLAVIRGDL
PVPRNARSVA VLHKNVAVLW APGRPASGKR RKAAVAGVTT ITQLVGKRVG VIGRTEANAG
LLAVILRQYG IDPAKVESVQ LTAADVAEAV RTGKADAFLA AGPLNSKVIG EALAATASSG
REPVFLGIDS SEALAANHPS YESASIPAGA FGGAPARPGD DVKTISFSHY IVARDGVSDA
TIASFTQQLF TARQTVMTEN PLAAKIETPD TDKDAVIPVQ AGAAAYVDGE QRSFLDRYSD
LIWFSLMGLS ATGSLGAWFA SYLRKDERNT NASQRDRLLD MLAAARRCDA QDELDAMQTE
ADAILRDALN CYENGAIDSA ALTAFSIALE QFHNAVVDRK MLLAAIPPAP PIRPARPQVV
|
|---|
| |