Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_0088 |
Symbol | |
ID | 3908730 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 94073 |
End bp | 94651 |
Gene Length | 579 bp |
Protein Length | 192 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637881969 |
Product | SNase-like nuclease |
Protein accession | YP_483711 |
Protein GI | 86747215 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1525] Micrococcal nuclease (thermonuclease) homologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.227871 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCCAC TCTTCAGAAC GAACCCGGTA CGGATCGCGC GACTGCCCTG GCGTGGGCGG CTGAGGTCGA TCTGGCCGTG GGTGTTCGTG CTCGGCGTCG CGGCCGGAAT GATGCTGCCG GCGCGGCACT GGGTGCAGTG GCCCTGGGCT GAGCCCGATT CGCAGGCGCT CAGGAACGAC AGCGAGACGG TGTGGCGGCG CGCCGGTAAC CCGGCGGTGC GGCACCCGGT CGACGTGCTC TATATCATCG ACGGCGACAC GTTCGAGGCG CGGGTGCATC TGTGGCCGGG AACGGATCTC GCGACCCGCG TTCGGCTGCG CGGCATCGAC GCGCCGGAGC TGAAGGCGCA GTGCGCGCAG GAACTCAAGC TTGCCGAAGC CGCGACCGGC GCCCTGCGCG ACCTGCTGCG GCAGGGTGAG GTGGCGATCT ACAATATCGG CCCCGACAAA TATCAGGGCC GCGTCGTCGC CGACGTCGCG ACCAAACGCA CCCCCAGCGT CTCCGCCGCG CTGCTGGAAG CCGGCTACGC CCGGGCTTAC GGCAGCGGGC GTCGCGAGGG CTGGTGCGGC GGGCGGTGA
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Protein sequence | MSPLFRTNPV RIARLPWRGR LRSIWPWVFV LGVAAGMMLP ARHWVQWPWA EPDSQALRND SETVWRRAGN PAVRHPVDVL YIIDGDTFEA RVHLWPGTDL ATRVRLRGID APELKAQCAQ ELKLAEAATG ALRDLLRQGE VAIYNIGPDK YQGRVVADVA TKRTPSVSAA LLEAGYARAY GSGRREGWCG GR
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