| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0048 |
|---|
| Symbol | |
|---|
| ID | 3908134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 48751 |
|---|
| End bp | 50181 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637881929 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_483671 |
|---|
| Protein GI | 86747175 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1231] Monoamine oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.708369 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATTT CCCGACGCCG CTTTCTCGGA GCCACCGCCG GCCTGGCCGT CGCGCCGATG
TTCGGGGGCC GCGCATCGGC GGCGCTGCCG CGCGAGGTCG ATGTCGTCGT GGTCGGCGCC
GGCGCTGCCG GCATCGCGGC GGCCCGGCGG ATCGCCGCGA GCGGCCGCAA GGTGATCGTG
GTCGAGGCTG CGGCGCAAAT CGGCGGCCGC TGCCAGACCG ACACCACCAG CTTCGACGCA
CCGTTCGATC GCGGCGCGCG GTTCCTGCAC AATCCGGACA GCAATCCGCT GGTGCGGCTG
GCGCGCAGCG AAGGCTTCGA GATCGCGCCG GCGGCGCCCG GGCAGAAAGT CCGGATCGGC
CGCCGCAACG CGCGGGCGCG CGAGACCGAG GACCTGCTCG CCACCATGGT GCGGGCCAGC
CGGGCGCTCG GCGACGCCGC CCGCGGCCGG GCCGACGTGT CCTGCGCCGC GGCGCTGCCG
AACGATCTCG GCGACTGGAC GGCGACGGTC GAATTCGTGC TCGGCCCAGT CGCCACCGGC
AAGGACCTGA AAGACCTCTC GGCGATCGAC GGCTTTCGCG CGCAGGATCG CAACGCCATC
ATCGGCGTGC GGCAGGGATT GGGCGGGCTC CTGGCCCGGC TTGCAGCGGC GCTGCCGGTG
ACACTGTCGA CGCCGGTGAC GCGGATCGTC TGGAGTGGCC GCGACATCGG CGTGGAGACC
GCATCGGGCA AGATCGCGGC GCGCGCGATC ATTCTCACCG CCTCGACCAA TGTGCTGAGT
TCGGGCGCGA TCGCGTTTTC GCCGGAGTTG CCGAAGCGCC AGCTCGATGC CGCCGGCAAG
CTCGGGCTCG GCAGCTACGA TCGGATCGCG CTGTCTTTCA AGGGCAACCC GCTCGGCCTG
TCGCGCGACG AGATGATGAT CGAGCGAAGT GACAGCGCCC GCACCGCGGT GCTGAGTGCC
AATGTCAACG GCTCGTCGCT GTGCACGGTC GATGTCGCCG GCGCCTTCGG CCGCGATCTG
TCGGCGCAGG GCGAAGCGGC GATGCAGGCG TTCGCGGTCG AATGGTTGAG CAAGCTATTC
GGCAGCGACA TCGCCGCAGC GATCGACCGC AAGGCGGCGA CGCGCTGGAA CGCGGCGCCT
TATGTGCAGG GCGCGATGTC GGCGGCGGCG CCCGGCGGCG CGGCGTCGCG CAAGGTGCTG
GCCGAGCCGC TCGGCAATCT GTTCATCGCC GGCGAAGCCA CCAGCGATCT GATGTGGGGC
ACCGTGCTGG GCGCATGGGA GAGCGGCGAG ACCGCCGCCG ACGCCGCGCT GAAGCGGATC
GGCCCGGCAA AGCCCGCCGC CGCCGCGGAG AAGCCGCAGC GCAAGCCGAA GCCGCGTCGC
CGCAATCAGG AAGCCACCGG CTCCGCCGAT CGCTGGCCGG GCAGCCGTTG A
|
|---|
| Protein sequence | MTISRRRFLG ATAGLAVAPM FGGRASAALP REVDVVVVGA GAAGIAAARR IAASGRKVIV
VEAAAQIGGR CQTDTTSFDA PFDRGARFLH NPDSNPLVRL ARSEGFEIAP AAPGQKVRIG
RRNARARETE DLLATMVRAS RALGDAARGR ADVSCAAALP NDLGDWTATV EFVLGPVATG
KDLKDLSAID GFRAQDRNAI IGVRQGLGGL LARLAAALPV TLSTPVTRIV WSGRDIGVET
ASGKIAARAI ILTASTNVLS SGAIAFSPEL PKRQLDAAGK LGLGSYDRIA LSFKGNPLGL
SRDEMMIERS DSARTAVLSA NVNGSSLCTV DVAGAFGRDL SAQGEAAMQA FAVEWLSKLF
GSDIAAAIDR KAATRWNAAP YVQGAMSAAA PGGAASRKVL AEPLGNLFIA GEATSDLMWG
TVLGAWESGE TAADAALKRI GPAKPAAAAE KPQRKPKPRR RNQEATGSAD RWPGSR
|
|---|
| |