Gene RPB_0022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0022 
Symbol 
ID3909705 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp22420 
End bp23301 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content66% 
IMG OID637881903 
Productshort chain dehydrogenase 
Protein accessionYP_483645 
Protein GI86747149 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[I] Lipid transport and metabolism 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATCAC TCGCGGGCAA GACGCTGTTC ATCACCGGGG CCAGCCGCGG CATCGGGCTG 
GCGATCGCGC TGCGGGCGGC GCGCGACGGC GCCAATGTGG CGATCGCCGC CAAGACCGCC
GAGCCGCAGC CCAAGCTGAA GGGCACGATC TACACTGCGG CCGACGAGAT CCGCGCCGCC
GGCGGGCAGG CGCTGCCGCT GATCTGCGAC ATCCGCGACG AGGCGCAAGT GATCGCCGCG
ATCGACAAGA CGGTGGCCGA ATTCGGCGGC ATCGACATCT GCGTCAACAA TGCCAGCGCG
ATCAGCCTGA CCAATTCGCA GGCGACCGAC ATGAAGCGCT ACGACCTGAT GATGGGCATC
AACAGCCGCG GCACCTTCAT GGTGTCGAAA TACTGCATCC CGCATCTGAA GAAGGCGGCC
AACCCGCACA TCCTGATGCT GTCGCCGCCG CTCGACATGA AGGCGAAATG GTTCGCGGCC
TCGACCGCCT ACACCATGGC CAAATTCGGC ATGAGCATGG TGGTGCTGGG ATTGTCGGGT
GAATTGAAGG GCGCGGGAAT CGCCGTCAAC GCGCTGTGGC CGCGCACCAC CATCGCCACC
GCCGCGGTCG GCAATCTCTT GGGCGGCGAC GCGATGATGC GCGCCAGCCG CACGCCGGAG
ATCATGGGCG ACGCCGCGCA CGCGATCCTG ACCAAGCCGT CGCGCGACTT CACCGGGCAG
TTCTGCATCG ACGACAAGGT GCTGTATGAG GCCGGCGTCA CCGATTTCGA GCGCTACCGC
GTCGATCCGA GCGTGCCATT GATGTCGGAT TTCTTCGTGC CGGACGACGA CGTGCCCCCG
CCCGGCGTCA CCGTCGCGTC GCTGCCGGGC GCGAAGGGGT AG
 
Protein sequence
MSSLAGKTLF ITGASRGIGL AIALRAARDG ANVAIAAKTA EPQPKLKGTI YTAADEIRAA 
GGQALPLICD IRDEAQVIAA IDKTVAEFGG IDICVNNASA ISLTNSQATD MKRYDLMMGI
NSRGTFMVSK YCIPHLKKAA NPHILMLSPP LDMKAKWFAA STAYTMAKFG MSMVVLGLSG
ELKGAGIAVN ALWPRTTIAT AAVGNLLGGD AMMRASRTPE IMGDAAHAIL TKPSRDFTGQ
FCIDDKVLYE AGVTDFERYR VDPSVPLMSD FFVPDDDVPP PGVTVASLPG AKG