Gene RPB_0011 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0011 
Symbol 
ID3910216 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp10656 
End bp12851 
Gene Length2196 bp 
Protein Length731 aa 
Translation table11 
GC content70% 
IMG OID637881892 
Productheavy metal translocating P-type ATPase 
Protein accessionYP_483634 
Protein GI86747138 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG2217] Cation transport ATPase 
TIGRFAM ID[TIGR01525] heavy metal translocating P-type ATPase
[TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.399414 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.898775 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGATGA CCCGGGACTT CTCGCACTAC GTCAAGGACG TCGATCCGCA GACCGCGCAT 
CTCGACCTCG CGGTCGAGGG CGTCAGCTGC GCCGGCTGCA TGGCCAAGAT CGAGCGCGGG
CTGTCGGCGA TTCCGGACGT GACGCTGGCC CGCGTCAACC TCACCGACCG CCGCCTCGCG
GTGGAGTGGA AGAAGGGCGC GGTGGAGCCG GCGCTGTTCA TCGATCGGCT CGCCGAACTA
GGCTACAAGG CCTATCCCTA CGAGCCGGTC CGCGCCGAGG TCGAGGAGAC CGAGCGCAGC
AAGTTCCTGC TGCGCTGCCT CGGCGTCGCC GCCTTCGCGA CCATGAACGT GATGATGCTG
TCGGTGCCGG TGTGGGTCGG CGGCGATCTC AGTCCCGAAG CACGCGATTT CTTCCACTGG
CTGTCGGCGC TGGTGGTGCT GCCCTGCGCC GCCTATGCGG GCCAGCCGTT CTTCCAGTCG
GCCTGGCGCG CGCTGAAGGC CAAGAGCGTC AACATGGACG TGCCGATCAC GATCGGCGTG
GTGCTGGCGC TGGGCATGTC GCTGGTCGAG ACCATCAATC ACGCCGAGCA CACGTATTTC
GATGCGGCGA TCATGTTGAT CGCCTTCCTG CTGGCGGGCC GCTTCCTCGA CCAGAAGATG
CGGCAGAAGA CCCGCGCGGT CGCCGGCAAT CTGGCCGCGC TGAAGGCCGA GACCGCGACC
AAATTCGTCG GTCCCGACGA AATCAGCGAA GTGCCGATCG CCGCGGTGCG CGCCGGCGAC
CTCGTGTTGC TGCGCCCGGG CGAGCGCTGC GCGGTCGACG GCAGCGTGGT CGAGGGCCGC
TCCGAGATCG ACCAGAGCCT GATCACCGGC GAGACGCTGT ATGTGAAGGC CGAGCGCGGC
ACCCAGGTCT ATGCCGGCAC GCTCAACATC TCCGGCACGC TGCGCGTGCG GGTTTCCGCG
GCGTCGGAAG GCACGCTGCT CGCCGAGATC ACCCGGCTGC TCGACCATGC GCTGCAGGCG
CGCTCGCGCT ACGTTCGGCT CGCCGATCGT GCCTCGCAGC TCTATGCGCC GGTGGTGCAC
GCCACCGCGC TGCTCACCGT GATCGGCTGG GTGCTGGCCG GCGCGAGCTG GCACGATGCC
ATCGTCATCG GCATCGCCGT GCTGATCATC ACCTGCCCCT GCGCGCTCGG TCTGGCGATC
CCCGCGGTGC AGACGGTGGC CTCGGGCGCG ATGTTCCGCG CCGGCGTGTT GCTCAATGCC
GGCGACGCAA TCGAGCGCGC CGCCGCGGTC GACACCGTCG TGTTCGACAA GACCGGCACG
CTGACGCTGC CGGAGCTCGA CGTCGTCAAC GGCGCCGGCG TGCCCGACGA GGTCTTCCAG
CTCGCCGGGC GCCTCGCGCT CGCCAGCCAT CATCCGGTCG CCGCCGCGGT GGCGCGCGCC
GCCCAGGCCA AGGCGCCGCT GCCCGGTGTC ACCGAGGAGC CCGGCCGCGG CGTCCGCGCG
CTGTTCGAGG GCGAGGAGCT GCGGCTCGGC AGCCCGGCCT TCTGCGGCGC CGATGCCGAG
GCCAACGCCA TTCTCAGCGC CGATCCGGAA GTCTCGGTGG TCGCCTTCAG CCGCGGCGAT
CGGCACACCG TGTTCGCGGT CCGGCAGTTG CTGCGGCCCG ACGCCGCCCG GACGATCGAC
GCGCTGCTCA ATCGCGGCAT CGCCGTGGAA TTGCTGTCCG GCGACCGCGA GCCGGCGGTG
CGGCATGCGG CCGACGCGCT CGGCGTCAGC GCCTGGCGCG CCGGGGTGAC GCCGGCCGAG
AAGATCGCCC ATATCGAGGC CTTGAAGGCG CAGGGGCGCG TGGTGATGAT GGTCGGCGAC
GGCATGAACG ACGCGCCGTC ACTCGCCGCC GCGCATGTGT CGATGTCGCC GATCAGCGCC
ACCCATCTCA GCCAGGCGAC CGCCGATCTG GTGTTTCTTG GCAAGGAACT TGCACCGGTA
TTGGCCGCGA TCGACTATTC GCGCAAGGCG ATGGCAGTGA TGCGGGAGAA TCTGACGCTG
GCGATCGGCT ACAATGTGCT CGCGGTGCCG ATTGCGATCG CGGGCCTCGC CACGCCGCTG
ATCGCCGCAT TGGCGATGTC CGGCTCGTCG ATCCTGGTGA TGCTGAATGC GATGCGCGCC
CGTCGGGTCC GCCTGGGGGG TGCGTCATGG AAGTGA
 
Protein sequence
MLMTRDFSHY VKDVDPQTAH LDLAVEGVSC AGCMAKIERG LSAIPDVTLA RVNLTDRRLA 
VEWKKGAVEP ALFIDRLAEL GYKAYPYEPV RAEVEETERS KFLLRCLGVA AFATMNVMML
SVPVWVGGDL SPEARDFFHW LSALVVLPCA AYAGQPFFQS AWRALKAKSV NMDVPITIGV
VLALGMSLVE TINHAEHTYF DAAIMLIAFL LAGRFLDQKM RQKTRAVAGN LAALKAETAT
KFVGPDEISE VPIAAVRAGD LVLLRPGERC AVDGSVVEGR SEIDQSLITG ETLYVKAERG
TQVYAGTLNI SGTLRVRVSA ASEGTLLAEI TRLLDHALQA RSRYVRLADR ASQLYAPVVH
ATALLTVIGW VLAGASWHDA IVIGIAVLII TCPCALGLAI PAVQTVASGA MFRAGVLLNA
GDAIERAAAV DTVVFDKTGT LTLPELDVVN GAGVPDEVFQ LAGRLALASH HPVAAAVARA
AQAKAPLPGV TEEPGRGVRA LFEGEELRLG SPAFCGADAE ANAILSADPE VSVVAFSRGD
RHTVFAVRQL LRPDAARTID ALLNRGIAVE LLSGDREPAV RHAADALGVS AWRAGVTPAE
KIAHIEALKA QGRVVMMVGD GMNDAPSLAA AHVSMSPISA THLSQATADL VFLGKELAPV
LAAIDYSRKA MAVMRENLTL AIGYNVLAVP IAIAGLATPL IAALAMSGSS ILVMLNAMRA
RRVRLGGASW K