Gene RPB_0006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0006 
Symbol 
ID3910211 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp7925 
End bp9004 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content68% 
IMG OID637881887 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_483629 
Protein GI86747133 
COG category[T] Signal transduction mechanisms
[N] Cell motility 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.906877 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGACAG CGGTCATTCG GCGGGATGGA TCGGCCGACC AGGTCGCTTC CGCGGACCAT 
GACGACATCT CGGCGCTGGT GGCGCGGCTG ACCTCCGAGG TCAATGAGAT CGCCTGCGGC
AAGACCAAAT CGATCCAGAA GATCACCAGC CAGATGAAGA TCCTGGCGCT CAACGCGCTG
ATCGAGAGCG CCCGCGCCGG CAAGCAGGGC GCCGGCTTCG CGATCGTGGC GCAGGAGGTG
CGCAATGTCG GCGCCCAGAT CGAGGAGATC GCGCGCGATC TCGAAAGCCA ACTCACCAAA
CGCACCGGCG AACTGATCAG TTCGATCGGC AGCATGACCG AGCGGTCGCG CGGCGACCGG
CTGGTCGATC TGTCGCTCAA CGCGGTCGAA CTGATCGATC GCAACCTCTA CGAGCGCACC
TGCGACGTGC GCTGGTGGGC GACCGATTCC GCGGTGGTCG ATTGCGCCGC GAAACCCGAT
GCGGCGTCGG CGTCCTATGC CGGCGAGCGG TTGGCGGTGA TCCTCGGCGC CTACACGGTG
TATCTCGACC TGTGGCTGTG CGGCCTCGAT GGCACGATCC TCGCCAACGG CCGGCCCGGC
CGGTTCGGCG TGGTCGGCAG CAGCGTCGCG GGCTGCGACT GGTTCAAGGA GGCACTACGC
CTGCGGTCGG GCGACGACTA TGTCGCCGGC AATGTCGAGC GGATGCCGCA GCTCGGCAAT
GCCCAGGTCG CGACCTATTG CGCCAGCGTG CGCAGCGACG GCCGCAGCAC CGGCGCGCCG
CTCGGCATCC TGGCGATCCA TTTCGACTGG GAGGCGCAGG CCAGGGCGAT TGTTCAGGGC
GTGCGGCTCG ATCCGCAGGA CAACGCCCGC GTGCTGCTGC TCGACTCCCG GTTCCGCGTG
ATCGCCGCCT CCGACGGAAG CGGCCTGCTC GAGGAACGCT TCCCCCTGAA GGTCGCCGGC
CAGCGCAGCG GTACCTACCG CGACGCCTCG GGCGCCATGG TCGGCTTCCA CCTCACCCCG
GGCTACGAAA CCTATCGGGG CCTCGGCTGG TACGGCGTGA TCGTCAGCCG GGCGGAGTAG
 
Protein sequence
MQTAVIRRDG SADQVASADH DDISALVARL TSEVNEIACG KTKSIQKITS QMKILALNAL 
IESARAGKQG AGFAIVAQEV RNVGAQIEEI ARDLESQLTK RTGELISSIG SMTERSRGDR
LVDLSLNAVE LIDRNLYERT CDVRWWATDS AVVDCAAKPD AASASYAGER LAVILGAYTV
YLDLWLCGLD GTILANGRPG RFGVVGSSVA GCDWFKEALR LRSGDDYVAG NVERMPQLGN
AQVATYCASV RSDGRSTGAP LGILAIHFDW EAQARAIVQG VRLDPQDNAR VLLLDSRFRV
IAASDGSGLL EERFPLKVAG QRSGTYRDAS GAMVGFHLTP GYETYRGLGW YGVIVSRAE