Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_4443 |
Symbol | |
ID | 3907419 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 5310576 |
End bp | 5311403 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637881775 |
Product | rhomboid-like protein |
Protein accession | YP_483518 |
Protein GI | 86743118 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.6785 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.502259 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCCGC ACTGCTACCG TCATCCGGAC CGGGAGACCT ACGTCTCCTG CCAGCGCTGC GGCCGGCCGA TCTGCCCCGA CTGCATGCGC CCGGCGGCGG TCGGCTTCCA CTGCCCGGAG GAGGGCGACC GCTCCACGCC GCAGCGCCGA ACGCGGACCA CACTCGGCGG CCCGGCTCAG GTCGCCCGGC AGGGGCTGGT CACCCAGATC CTCATCGGCC TGTGCGTCGC CGCCTACATC CTGCAGGGCG CGCCCGGGCT GACCGGCCGC GGCACCTTCA ACCGCTTCAC CGGCGACTTC GCCATGATCG GAATCCGGAT CGCGGCGGAC GACCAGTACT ATCGGCTGCT GACCGCGGCC TTCCTGCACG CCGGCGTGCT CCACATCCTG TTCAATATGT ACGCGCTGTA TCTGCTCGGG TTTCAGCTCG AGGCGATCCT CGGGCGGGCT CGGTACCTCG CGCTGTTCGT GGCGGGGGCG CTCGGTGGGA ACACCCTGAG TTACGTGCTC GGTGACGGGT TCACCGTGTC GGTCGGCGCG TCCACCGCGA TCTTCGCGTT CTTTGCCGCC TACTACATCA TCGCCCGCCG CCTGCGGGTG GACTCCCGGC AGATCCTCAT CGTGCTCGGG ATCAACCTCG CCATCACCTT CTCGTTCAGC AACATCGACA AATGGGGGCA TCTCGGTGGG CTGGCTGTCG GTGCCATCAT CGGTCTGATC TACGCCTACG TCCCGCCCCG CCGGGTGCTG CTCCAGGCGG GCGGGGTCGC CGCCGTGCTC GCGTTGCTGT TCGCCGCCGC GATCATCAAG TCGTCGACAC TGGTGTAG
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Protein sequence | MIPHCYRHPD RETYVSCQRC GRPICPDCMR PAAVGFHCPE EGDRSTPQRR TRTTLGGPAQ VARQGLVTQI LIGLCVAAYI LQGAPGLTGR GTFNRFTGDF AMIGIRIAAD DQYYRLLTAA FLHAGVLHIL FNMYALYLLG FQLEAILGRA RYLALFVAGA LGGNTLSYVL GDGFTVSVGA STAIFAFFAA YYIIARRLRV DSRQILIVLG INLAITFSFS NIDKWGHLGG LAVGAIIGLI YAYVPPRRVL LQAGGVAAVL ALLFAAAIIK SSTLV
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