| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4254 |
|---|
| Symbol | ispD |
|---|
| ID | 3907221 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 5076310 |
|---|
| End bp | 5077110 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637881580 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_483329 |
|---|
| Protein GI | 86742929 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGCGAAG GTCACCGGTT GCCGGTGGCG AGCCCCCGGG TGGCGGCGAT CGTGCCGGCT
GCCGGCCGGG GTGAGCGGCT GGGGGGAGGT ACTCCCAAGG CGCTGCGAGC CCTCGGGGGC
AGGCCCATGC TGGTGCGCAC GGTGGAATCG TTGCGTCGCT CCAGGCTGGT GACGCAGATT
GTCGTCGCGG CGCCACCGAC GCTGGTCGAT GCCGTGGCCC AGTTGCTTGG CGGGGACGTG
TATGTGATCG CCGGAGGCGC CGAGCGGGTG GATTCGGTCC GCCGCGCCCT GCGAGCCGTG
GACGACGACG TCTCCGTGGT ACTGGTCCAC GACGCCGCCC GGCCGCTGAC GCCCCCCGAG
CTGGTCGACG CGGTGGCGGC TGCGGTGCTC GACGGACATC CCGCGGTGAT TCCCGTCGTG
CCGCTGGCCG ACACGGTCAA GGAGGTGGAC GCCGACGGGC GGGTGGTGCG TACCCCGCCG
CGGGACGGTT TGCGAGCCGT GCAGACCCCG CAGGGATTCC GCCGCGACGT GCTGAGCGCC
GCGTATGCGC TCGAGGACAT CGCTGTGACC GACGATGCGG GCCTGGTGGA GGCTCTGGGA
GTGCCGGTGA CGACCATTCC CGGCGCGCAG GAGGCATTCA AGGTGACTCG ACCGGCGGAT
CTCGTGCTCG CCGAGGCGCT ACTCGCCCGC TGCGACCCCG CGGACGACGC CCGGTCCGCG
GAGGCCCGGT CCGCGGAGGC CCGGTCCGAG GAGCCTCAGT TCGCGGGTGC CCGGTCCACG
GACGCCCGGA GTGGCGGATG A
|
|---|
| Protein sequence | MGEGHRLPVA SPRVAAIVPA AGRGERLGGG TPKALRALGG RPMLVRTVES LRRSRLVTQI
VVAAPPTLVD AVAQLLGGDV YVIAGGAERV DSVRRALRAV DDDVSVVLVH DAARPLTPPE
LVDAVAAAVL DGHPAVIPVV PLADTVKEVD ADGRVVRTPP RDGLRAVQTP QGFRRDVLSA
AYALEDIAVT DDAGLVEALG VPVTTIPGAQ EAFKVTRPAD LVLAEALLAR CDPADDARSA
EARSAEARSE EPQFAGARST DARSGG
|
|---|
| |