Gene Francci3_4081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_4081 
Symbol 
ID3907045 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp4887450 
End bp4888124 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content68% 
IMG OID637881409 
Productputative transposase 
Protein accessionYP_483158 
Protein GI86742758 
COG category[L] Replication, recombination and repair 
COG ID[COG3316] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCGAC GTCGTGCCTG TCCACCGGTC CCGACATCGG AGTTCGCGGG GTTCCGGTTC 
CCACCCGAGG TGATCGTCCT CGCTGTCCGC TGGTACCTGC GGTACGCCCT GTCGTACCGG
GACGTCGAGG AGCCGCTCGC CGACCGCGGC CTTGAGGTCG ACCACGTCAC GGTCTACCGG
TGGGTGCGGC GCTTCACGCC CTTGCTGGTC GACGCGGCCC GGCCATACCG GCACACACCG
GGTGATCGTT GGTTCGTTGA CGAAACGTAT GTGAAGGTCG CTGGACGATG GACCTATCTG
TACCGGGCCG TCGACCAGTC CGGCCAGGTC ATCGACGTGC TGGCCTCCGA GAAGCGGGAC
CTCGCCGCAG CCCGCCGGTT CTTCACCCGC GCCCTGTCCC ACGGCCGGCG GCCCGTCGAG
GTGACCACCG ACCGGGCAGC CTTCTACCCA CGAGTCCTCG ACGAACAGCT CCCCGCCGCT
CATCACGTCG ACGACCAGTA CGCGAACAAT CCGCTCGAGG CCGACCACGG CCGGTTCACG
GCACGACTAC GGCCGATGCG CGGCCTGAAA CGCCTCCGCT ACGTACAGAT CATCGGCTCC
GGGCACGCGT TCGTGCAGAA CATCCGCCGC GGCCACTACG AACTGGGCGT CGATGCCGAC
CCCGGAACCG GCTGA
 
Protein sequence
MRRRRACPPV PTSEFAGFRF PPEVIVLAVR WYLRYALSYR DVEEPLADRG LEVDHVTVYR 
WVRRFTPLLV DAARPYRHTP GDRWFVDETY VKVAGRWTYL YRAVDQSGQV IDVLASEKRD
LAAARRFFTR ALSHGRRPVE VTTDRAAFYP RVLDEQLPAA HHVDDQYANN PLEADHGRFT
ARLRPMRGLK RLRYVQIIGS GHAFVQNIRR GHYELGVDAD PGTG