Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_3776 |
Symbol | |
ID | 3906060 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 4524574 |
End bp | 4525659 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637881102 |
Product | alpha/beta hydrolase fold |
Protein accession | YP_482856 |
Protein GI | 86742456 |
COG category | [R] General function prediction only |
COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.904669 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00241214 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | GTGAGGAAGA ATCCAGCCTC GGTCGTGGCA TCGGCAGACG GGACGACGAG CACCGGGGGC GGCCGTGCCC ATGGCGTGCC CCGGGTGGGC CCGCTGACCT CCCGCTTCGT CACGGTCCAC GGGTACCGGC GGTGCTATCT GCGGGCCGGG CGCGGGCCGG TTCTACTGCT CATCCACGGC ATCGGGGACA ACGCGCGCAC CTGGGCCTCG ATCATCCCGA AGTTGGCCCG CCGGCACACC GTCATCGCTC CCGACCTGCT GGGACACGGC GAGTCGGACA AACCGCGCGG TGACTACTCG GTGGCCGGCT ACGCGTGCGG CATGCGTGAC CTGCTCACCA TCCTCGGAGT CGAGCGCGCC ACGGTCGTCG GACACTCGCT GGGCGGCGGG GTGGCCATGC AGTTCGCCTA CCAGTTCCCG GAGCGCTGCG AGCGGTTGGT GCTGGTCGCC ACCGGCGGGG TCGGGCCGCA CCTGCATCCC GCGCTGCGGG CGGCGGCCGT GCCCGGAGCC GGGGCGGTGC TTTCCCTGAT CGGCATGCCG CCGGTGCGGG TCGCCGGCTG GGCCGGAATG CACGCGCTGC GCCTGCTGCA CACCGATCTC GGGCGGGACG CCGACGATCT CCTGAACGTC TTCGACTCGC TGGGCGTACC CACCGCGCGG GCGGCGTTCC TGCGCACGCT ACGGTCGGCG GTGGACGGGC GTGGGCAGTC CATCACGATG CTGGACCGGT GCTACCTCGC CGCCGGGATG CCCTCGCTGA TCGTCTGGGG TGACCGGGAT GCCGTCATCC CGGTTGAGCA CGCGTGGATG GCGCACGAGG CGATGCCGGG GAGCCGCCTG GAGATCTTTT CCGGTGCCGG GCATTTCCCC CATCACACTG ACCCCGAACG CTTCCGGGCG GTTCTCGAGG ATTTTCTGGC GACCACCCGG CCGGCGAGTC ACTCCCCGCA GCAGTGGCGG ACGATGCTGC GTGAGCACGG CCGCTCGACC AGGACCACGG AAGTGTCCGC GCCCGCCGTC CAGCCGTCGG GCGCGCGTTC GGCCCCGGCG GAAGCCGCGG GTCGTGGCCT CACCCGGAGC CGATAA
|
Protein sequence | MRKNPASVVA SADGTTSTGG GRAHGVPRVG PLTSRFVTVH GYRRCYLRAG RGPVLLLIHG IGDNARTWAS IIPKLARRHT VIAPDLLGHG ESDKPRGDYS VAGYACGMRD LLTILGVERA TVVGHSLGGG VAMQFAYQFP ERCERLVLVA TGGVGPHLHP ALRAAAVPGA GAVLSLIGMP PVRVAGWAGM HALRLLHTDL GRDADDLLNV FDSLGVPTAR AAFLRTLRSA VDGRGQSITM LDRCYLAAGM PSLIVWGDRD AVIPVEHAWM AHEAMPGSRL EIFSGAGHFP HHTDPERFRA VLEDFLATTR PASHSPQQWR TMLREHGRST RTTEVSAPAV QPSGARSAPA EAAGRGLTRS R
|
| |