| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3764 |
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| Symbol | |
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| ID | 3906048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 4513251 |
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| End bp | 4515182 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637881090 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_482844 |
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| Protein GI | 86742444 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.124369 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.415801 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCCGA CGCCGCAGCC CGATGGTCAG GTACGCAGCG ACATCTGCGG GCCTCGGCCC
GGCCTGCCGG ACCCGCCGGC ACTCGCCCGG TGGGAAGAGG CGCTGCTGTG TCTGCGGGTG
TTCGACACGG CGCCGATCAT ATTCGCGGTC TTCGACCGCG GCCTGCGCTA CCGGGCGGTG
AACCAGGCGG CTGCCAGGGC CTCCGGCCTG TCCGCCGAGG AGATGATCGG TGGGTATGGC
CCGGAGGTGC TCCCGGGCAT AGACCCTCTC GGCTGGGAGC GGCTCCGCCG GGTGTTGGCG
ACCGGTGAGG CGATCCTCGA CGAGGAGATC ATCGGAGCGA CCCCGGCGGA CCCGTCGAAT
CCGCGCATCT GGCGGGCCTC CTACTATCCC CTGCATGACT CGACCGGGGC CAGAATCGCG
GTCGGCGTGA CGGCGGTGGA CGTGACCGAC GAGCGTCGCG CGCAGGCCGA ACGTGACCTG
GTACTGCGGC GGTTGCGGCT GCTGAGCCGG GCGAGCGGGC TGCTCGGCGC GTCGCTGGAC
CTGTCGGCCA CCTTGCGGGA GATGGTCACG CTGGTCGTCC CGGAATTCGC CGACGCCTGC
GAGCTGTACC TCGCCGACGA GCCCTGCCCC CCGGGGGCCG AACCCGACCC GCCGCTGCTT
CGCCGAGCCG TGTGGGCACA CTCCCCCGAC CTGCCCCGAC CATCCCCCGA CCTGCCCCTC
CCCCCACCAG ACACAAGAAG CAACCTGACC GGACGCCAGG TCGGACGGGT ATTCCTCACC
CGCCAACCGG TCCGCCTCGA CCTGGACGAA CGGCTCCCCG ACGCACCCGA CGCACCCGAC
GCACCCGACG CACCCGACGC ACCCGACGCA CCCGACGCAC CCGACGCACC CGACGCACCC
GACGCACCCG ACGCACCCGC GAGCAGCGTG GCCGCCCTGT TCCGGCATTC CCACCTTCGA
TCCGCGATCA TCGTCCCGCT GCTGGTCGGC CCGCACTGCC TGGGAACCGT CGGGTTCGCC
GTCACCGCGG CCCGCCCCTA CCGCGAGCAG GACACCCAGA CCGCCACCGA ACTGGGCAGC
CGGATCGCAA CCGCGATCGC GAACGCCCAC GCCTTCGACC ACCAGCGGAC CGCCGCCCTG
ACCCTGCAAC GCGCCCTGCT GCCCCGCGAC ATCCCCACCC TGGACGACCT CGACCTGGCC
TGGCGCTACC AGCCCGGCAC CAGCGGCACC GAGGTCGGCG GCGACTGGTT CGACGTCATC
CCCCTGCCGG CCGGACGGGT CGCGCTGGTC ATCGGCGACG TCATGGGCCG CGGCCTGAAC
GCCGCCGCCG CCATGGGCCA GCTACGCACC GCCGCCCGCA CCCTCGCCCG CCTCGACCTG
CCCCCCGCCG CCCTGCTGAC CGAACTCGAC GCCGTCACCC GCAGCATCGA CACCATCGCC
AGCGTCGCCT ACGTCATCCA GGACCCGGCC ACCAGCACCC TGACCGTGGC CAACGGCGGC
CACCTCCCCC CCGCCCTGCG CCACCCCGAC GGCACCGCCG ACCTCCTCGA CGACCCCCAC
GGGATCATCC TCGGCGTCAC CGAACAGACC TTCACCGAAA CCCGCCACCG CTTCCCCCCC
GGCTCCACCC TCGCCCTCTA CACCGACGGC CTCGTCGAAT CCCCCACCGT CGACATCGGC
GAGGGCTGCC GACGCCTGCT GCGCATCCTC ACCGAAACAG CCGACCTGCC CACCACCGCG
GACCGGCTAC TGACCCTCCT CAACCGCAAC GACGGCAACG ACGGCTACGA CGACGACGTC
ACCCTCCTCC TCGCCCACGC CCGGCGGGGT CGGCGAGCTC AGACCGAGAG CAGCCCATGC
TCCGCGCACC GGGCCGACCA ACCCACCGGG GTGACCTGGA CGACCATCCG CCGCCGGCAG
GCTCGACAGT AG
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| Protein sequence | MNPTPQPDGQ VRSDICGPRP GLPDPPALAR WEEALLCLRV FDTAPIIFAV FDRGLRYRAV
NQAAARASGL SAEEMIGGYG PEVLPGIDPL GWERLRRVLA TGEAILDEEI IGATPADPSN
PRIWRASYYP LHDSTGARIA VGVTAVDVTD ERRAQAERDL VLRRLRLLSR ASGLLGASLD
LSATLREMVT LVVPEFADAC ELYLADEPCP PGAEPDPPLL RRAVWAHSPD LPRPSPDLPL
PPPDTRSNLT GRQVGRVFLT RQPVRLDLDE RLPDAPDAPD APDAPDAPDA PDAPDAPDAP
DAPDAPASSV AALFRHSHLR SAIIVPLLVG PHCLGTVGFA VTAARPYREQ DTQTATELGS
RIATAIANAH AFDHQRTAAL TLQRALLPRD IPTLDDLDLA WRYQPGTSGT EVGGDWFDVI
PLPAGRVALV IGDVMGRGLN AAAAMGQLRT AARTLARLDL PPAALLTELD AVTRSIDTIA
SVAYVIQDPA TSTLTVANGG HLPPALRHPD GTADLLDDPH GIILGVTEQT FTETRHRFPP
GSTLALYTDG LVESPTVDIG EGCRRLLRIL TETADLPTTA DRLLTLLNRN DGNDGYDDDV
TLLLAHARRG RRAQTESSPC SAHRADQPTG VTWTTIRRRQ ARQ
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