| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3755 |
|---|
| Symbol | |
|---|
| ID | 3906039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 4503677 |
|---|
| End bp | 4504693 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637881081 |
|---|
| Product | sigma 28 subunit |
|---|
| Protein accession | YP_482835 |
|---|
| Protein GI | 86742435 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02980] RNA polymerase sigma-70 factor, sigma-B/F/G subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGTCGA CCGGGAGGAC GCCGACCCCA CCGCGCACGG TACCTGATCG CGACGTAGCC
GATCGCAACG TAGCCGATCG CGACCCGGTG TCCACGGTGG ACCCGGTAGC GGCGTTGAGC
CAACGGGGAT CCGGGCTCGA CGACCAGCCG GGGATCGACA GCGATCTCGG CCCCGAGGTG
ACGACCCAGG CGCCACCGAA CCCGGCGGTG GACGGTCCGG CGATCGACGG GGAGAGCGAT
CGGCCCGAGC GCGCGCACTC GCCCGACCGG GCCCTGGCCC GCACGCTGTT CGTCCGCCTC
GCCGAGCTAC CCGAGGACGA TCCCGAACGC TCCGCCGTCC GCGATCAGCT CGTCCGGATG
CACCTACCGC TGGTGGAGTA CCTCGCCCGC CGCTTCCGTA ACCGGGGCGA GCCGCTCGAC
GACCTCGTCC AGGTGGCCAC CATCGGATTG ATCAAATCGG TGGACCGGTT CGATCCGGAA
CGTGGGGTGG AGTTCTCGAC CTACGCCACC CCGACCATTG TCGGTGAGAT CAAGCGGCAC
TTCCGGGACA AGGGCTGGGC CATCCGGGTC CCCCGCCGCC TTCAGGAGCT CAAACTCTCC
CTGACGAAGG CGACCTCCGA GCTCTCCCAG ACGCTGGGCC GCTCCCCCAC GGTGAGCGAG
ATCGCCCGGC ATCTGCAGAT GAGCGAAGAT GACGTCCTCG AGGGGCTGGA GTCGGCGAAC
GCCTACTCGG CGGTCTCCCT CGACGCGCCG GACTCCGGCG ACGACGAGGC GCCCGCCGTC
GCGGACACCC TCGGCGTCCA GGACGAGTCC CTGGAGGGCG TCGAGTACCG CGAGTCCCTC
AAGCCGCTGT TGGAGAAGCT CCCTGCGCGG GAGAAGCGCA TCCTGCTGCT GCGGTTCTTC
GGCAACATGA CCCAGTCCCA GATCGCGACC GAGCTCGGCA TCTCCCAGAT GCACGTTTCC
CGGCTCCTGG CCCGGACCCT GGCCCAGCTG CGGCGCGGCC TGCTCGAGGA CGGCTGA
|
|---|
| Protein sequence | MTSTGRTPTP PRTVPDRDVA DRNVADRDPV STVDPVAALS QRGSGLDDQP GIDSDLGPEV
TTQAPPNPAV DGPAIDGESD RPERAHSPDR ALARTLFVRL AELPEDDPER SAVRDQLVRM
HLPLVEYLAR RFRNRGEPLD DLVQVATIGL IKSVDRFDPE RGVEFSTYAT PTIVGEIKRH
FRDKGWAIRV PRRLQELKLS LTKATSELSQ TLGRSPTVSE IARHLQMSED DVLEGLESAN
AYSAVSLDAP DSGDDEAPAV ADTLGVQDES LEGVEYRESL KPLLEKLPAR EKRILLLRFF
GNMTQSQIAT ELGISQMHVS RLLARTLAQL RRGLLEDG
|
|---|
| |