Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_3546 |
Symbol | |
ID | 3904485 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 4238578 |
End bp | 4240986 |
Gene Length | 2409 bp |
Protein Length | 802 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637880867 |
Product | putative phosphoketolase |
Protein accession | YP_482627 |
Protein GI | 86742227 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3957] Phosphoketolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.252555 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.409021 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGAGCG TCGTCGACGC CGAGCGGAGC GGGGCGGATC CGGCCGCGGG GCCGTTGTCC CCGGCGGAGC TTGACCTCAT CCACGCCTAC TGGCGAGCGG CGAACTATCT GTCCGTCGGA CAGATCTACC TGCTCGACAA TCCCCTGCTC ACCGAGCCGC TGCGTCCGGA GCACGTCAAA CCGCGCCTGC TCGGGCACTG GGGCACGACT CCCGGCCTGA ACCTCATCTA CGCCCATCTG AACCGCGTGA TCCGGGCAAA GGACCTGAAC GCCATCTACA TCATCGGTCC GGGTCACGGC GGTCCCGGCA TCGTGGCGAA CGCCTACCTG GAAGGCACCT ACAGCGAGGT CTACCCCTCG ATCGGCCGGG ATGTGGCGGG GATGCGGCGG CTGTTCCGGC AGTTTTCCTT CCCCGGCGGA ATTCCCAGCC ACGTCGCGCC GGAGACTCCC GGGTCCATTC ATGAGGGCGG CGAGCTCGGT TACGCGCTGA CCCACGCCTA CGGCGCGGCC TTCGACAATC CCGACCTGGT GGTCTGCGCC GTCGTGGGGG ACGGGGAGGC CGAGACGGGC CCGCTCGCGG CGAGCTGGCA CTCCAACAAG TTCCTCGACC CGGGTCGCGA CGGCGCGGTG CTGCCGGTCC TGCACCTCAA CGGCTACAAG ATCGCCAATC CGACGATCCT GGCCCGCATC CCCGAGCAGG AGCTGACCGC GCTCCTGCGT GGCTACGGGT ACCATCCGTA CTTCGTGGTC GGGGACGACC CGGCCGCGGT GCACCAGCGG ATGGCGGGCG TCCTGGACGC CGCCGTCGGC GAGATCCACG AGATCCAGGA CCGGGCCCGC CGCCACGGCC GCACCGAGCG CCCCACCTGG CCGATGATCG TGCTGCGGAC CCCCAAGGGG TGGACCGGGC CGGCCACTGT TGACGGCCTG CCGGTCGAGG GCACGTGGCG GTCCCACCAG GTGCCCGTCG CGCAGTTGCA CGACAACCCC GGGCACTTGG CCCAGCTGGA GGCGTGGCTG CGCTCCTACC GGCCGGAGGA GCTCTTCGAT GCCGGCGGCG CCCCGCGGGC CGAACTCGCC GCGCTCGCCC CCCGCGGTCC CCGGCGGATG AGTGCGAACC CGCATGCCAA CGGGGGCGAG CTGCTGCGTG ATCTGACTCT TCCCGACTTC CGTGACTACG CGGTCGACGT CACCGCCCCC GGGACCACCC TCGCCGAGCC GACCCGGATC CTGGGCGCGT TCCTACGGGA CGTGGTGGCC GCCAATCCGA GCACCTTCCG GGTGATGGGC CCGGATGAGA CCGCCTCCAA TCGGCTGGGT GCGCTCTTCG AGGTGACCGA CCGCGTCTGG AACGCCGGGA CGGAACCGAC GGACGAGCAC CTGGCCGTGG ACGGTCGGGT CATGGAGGTG CTTTCCGAGC ATCTGTGCCA GGGCTGGCTG GAGGGCTATC TGCTCACCGG CCGGCACGGG TTCTTCTCCT GCTACGAGGC GTTCATCCAC ATCGTCGACT CGATGGTCAA TCAGCACGCG AAATGGCTGA AGACCACCCG GCACATCCCG TGGCGGCGCC CGATCGCATC GTTGAACTAC CTGTTGACCA GCCACGTGTG GCGGCAGGAC CACAACGGCT TCTCCCATCA GGACCCCGGA TTCATCGACC ACGTCGTGAA CAAGAAGGCC GAGGTCGTCC GGGTGTACCT GCCCCCGGAC GCGAACACCC TGCTCTCCGT CGGCAACCAC TGCCTGCGCA GCCGGCACTA CATCAACGTG ATCGTGGCCG GCAAGCAGCC GGCGTTGAAC TACCTGTCGA TGCCGGCGGC GATCGCCCAC TGCACCCGTG GCCTGGGCAT CTGGGACTGG GCCAGCAACG ACCACGACGC GCCCGGCGAC GGGCTGCCGG ATGTGGTGAT GGCCTGTGCC GGGGACATCC CGACCCTGGA GACCCTCGCC GCGGTGGACC TCCTGCGCCA GCACTTCCCC GATCTGAAGG TGCGCGTCGT CAACGTCGTC GACCTGATGT CCCTGCAGGA CGAGGCGGAA CATCCGCACG GCATCTCGCA CGCCCGCTTC GACGCGCTGT TCACCACCGA CCGGCCGATC ATCTTCGCCT ACCACGGCTA TCCCTGGCTG ATCCACCGGC TGACCTACCG GCGGCACAAC CATCACAACC TGCATGTCCG TGGCTACATC GAGGAGGGGA CGACCACCAC CCCGTTCGAC ATGGTCATGC TGAACAACCT CGACCGGTTC CACCTGGTGG CGGACGTCAT CGACCGGGTA CCGAGCCTGG GCGCCCGCGC CGCGCACGTC CGGCAGCAGA TGATCGACGC GCGGCTCGCG GCCCGGACCT ACACCCGGGA CCACGGCGAG GACGCCCCGG AGATCCGGAA CTGGACTTGG CCCTACTGA
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Protein sequence | MTSVVDAERS GADPAAGPLS PAELDLIHAY WRAANYLSVG QIYLLDNPLL TEPLRPEHVK PRLLGHWGTT PGLNLIYAHL NRVIRAKDLN AIYIIGPGHG GPGIVANAYL EGTYSEVYPS IGRDVAGMRR LFRQFSFPGG IPSHVAPETP GSIHEGGELG YALTHAYGAA FDNPDLVVCA VVGDGEAETG PLAASWHSNK FLDPGRDGAV LPVLHLNGYK IANPTILARI PEQELTALLR GYGYHPYFVV GDDPAAVHQR MAGVLDAAVG EIHEIQDRAR RHGRTERPTW PMIVLRTPKG WTGPATVDGL PVEGTWRSHQ VPVAQLHDNP GHLAQLEAWL RSYRPEELFD AGGAPRAELA ALAPRGPRRM SANPHANGGE LLRDLTLPDF RDYAVDVTAP GTTLAEPTRI LGAFLRDVVA ANPSTFRVMG PDETASNRLG ALFEVTDRVW NAGTEPTDEH LAVDGRVMEV LSEHLCQGWL EGYLLTGRHG FFSCYEAFIH IVDSMVNQHA KWLKTTRHIP WRRPIASLNY LLTSHVWRQD HNGFSHQDPG FIDHVVNKKA EVVRVYLPPD ANTLLSVGNH CLRSRHYINV IVAGKQPALN YLSMPAAIAH CTRGLGIWDW ASNDHDAPGD GLPDVVMACA GDIPTLETLA AVDLLRQHFP DLKVRVVNVV DLMSLQDEAE HPHGISHARF DALFTTDRPI IFAYHGYPWL IHRLTYRRHN HHNLHVRGYI EEGTTTTPFD MVMLNNLDRF HLVADVIDRV PSLGARAAHV RQQMIDARLA ARTYTRDHGE DAPEIRNWTW PY
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