| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3440 |
|---|
| Symbol | |
|---|
| ID | 3905680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 4090381 |
|---|
| End bp | 4092102 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637880763 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_482523 |
|---|
| Protein GI | 86742123 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0475] Kef-type K+ transport systems, membrane components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGGTGC CCGCGGCGTC AGCCGACCGA ATCGCAGGCG CGCGGGCGAC GGGGGCGACG
GGGGATGACG AGGAATCCGG TATCCGGTAT CCGGTATCCG TGATTCCGGC TCTCGGCTGG
CCTGTCGCCG ATGCGCCTGC CGGTCGTCGG ACGTCGGCCT GGAGCCCTCG CCGCCGTCAA
TGGTGGCGAG ACGTCCGAGG AGAGACATTG TCCCTCACGT CCACTCGGCC CGTCCCCTCG
ATCCCGCCGC ATTCCCTGTT GCTGTTCCTG CTTCAGCTCG CCATGCTGCT CAGTCTGGCA
ATTCTGCTCG GACGTGTCGC CGTGCGCCTG CGGATGCCTG CCATCGTCGG TGAGCTCTGC
GTCGGCGTGC TCCTCGGCCC GTCGTTGCTC GGAACGCTGT GGCCGACCTT CTCGGACTGG
TTTCTTCCGC GTGACGCCGC GCAGTTCCAC CTGCTCGACG CGGTGGGACA GCTCGGTGTC
CTCTTCCTGG TCGCGCTCAG CGGGTTCGAG ATTGATACGC GGATCATCCG CCGGCGCAGT
CTCACCGTCG CCCGGATCAG CCTCGGTGGG TTGCTCCTGC CGTTGGGTTT CGGGATCGTC
ACCGGCGTGC TGATGCCGTC CTCCCTGCTG GGCCCCGACG GCGACCGGAC GGTCTTCGCG
CTGTTCCTCG GGGTGGCGAT GTGCGTGAGC GCCATCCCGG TGATGGCGAA GACGCTCATG
GAGATGCGTC TGACCCATCG GGAGGTCGGG CAGCTCGCGC TGGCCGGCGG GGTCATCGAT
GACGCCGTTG GCTGGCTGAT GCTGGCGGTC GTGTCCGCGA TGGCGACCAC CGGTGTCCGG
GCGGGCGACA CGGCGTTGTC GGTGCTTTAC GTCCTCGGGG TGGGGATCTT CGCGTTGACG
ATCGGCCGGG TCGTCGTCCG GGCCGTGCTG GGACGGATCA TTGCCACGAG TGGTGCCGGG
GCCGGGGCTG GCGCCGATCC CGGCGCCAGG AGCGGGTCGG TCGTGGCCTT CGTGGCCGTG
CTGGTGCTCG CGTCGGCGGC CGGGACGCAG GCGTTGGAGC TGGAGGCGGT GTTCGGCGCC
TTCCTGGGCG GGGTCGTCCT CGGGTCGTCC GGCCTGGTGG ATCATGCCAG TGTCGCCCCG
TTGCGAATCG TGGTGATGGC GGTGCTTGCG CCCATCTTCT TCGCGACGGC GGGCCTGCGT
GTCGATCTCA CTGCTCTGAG TGAAACCCGG GTTCTGCTCG CGGCGGTGAT CGTGCTCGCG
GTCGCGGTCT TCGGCAAGTT TGCCGGTGTG TACGCGGGGG CCCGGGCCAG TCGGCTGACC
CCCTGGGAGG GTCTCGCTCT GGGCGCCGGC ATGAACGCGC GGGGAGTCAT CGAGATCGTG
GTGGCCAGCG TCGGCGTGCG GCTGGGGGTG CTCTCCACCG AGACGTACAC GATCATCGTT
CTGGTCGCGA TCGTCACGTC GGTCATGGCT CCGCCGATCC TGCGCCGCGC CATGCGACAG
GTCGAGCAGA CCGCGGCCGA GGAACAGCGT CGCCTTGTGC TGGACGGTCA CCATGCGAGC
GGTGCCGGTG GCGTCGGTGC CGCGGAGGCG GGTGTCATCA CCCGTCGCGA GACCCGGACG
CTCCCCGCGG CTCGGTCCCG CGCACGATAC CGAAGGTCGG TGAACCCATC CAATACAACG
GGTAGGGACG GGTTAGAATT CGAGGACGAA TCCGCCGGCT GA
|
|---|
| Protein sequence | MPVPAASADR IAGARATGAT GDDEESGIRY PVSVIPALGW PVADAPAGRR TSAWSPRRRQ
WWRDVRGETL SLTSTRPVPS IPPHSLLLFL LQLAMLLSLA ILLGRVAVRL RMPAIVGELC
VGVLLGPSLL GTLWPTFSDW FLPRDAAQFH LLDAVGQLGV LFLVALSGFE IDTRIIRRRS
LTVARISLGG LLLPLGFGIV TGVLMPSSLL GPDGDRTVFA LFLGVAMCVS AIPVMAKTLM
EMRLTHREVG QLALAGGVID DAVGWLMLAV VSAMATTGVR AGDTALSVLY VLGVGIFALT
IGRVVVRAVL GRIIATSGAG AGAGADPGAR SGSVVAFVAV LVLASAAGTQ ALELEAVFGA
FLGGVVLGSS GLVDHASVAP LRIVVMAVLA PIFFATAGLR VDLTALSETR VLLAAVIVLA
VAVFGKFAGV YAGARASRLT PWEGLALGAG MNARGVIEIV VASVGVRLGV LSTETYTIIV
LVAIVTSVMA PPILRRAMRQ VEQTAAEEQR RLVLDGHHAS GAGGVGAAEA GVITRRETRT
LPAARSRARY RRSVNPSNTT GRDGLEFEDE SAG
|
|---|
| |