| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3320 |
|---|
| Symbol | |
|---|
| ID | 3904106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 3934761 |
|---|
| End bp | 3935546 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637880645 |
|---|
| Product | putative hydrolase |
|---|
| Protein accession | YP_482406 |
|---|
| Protein GI | 86742006 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2267] Lysophospholipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.859437 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.797481 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGGG TGGAGCTGAC GTCGATCGAT GGAGTACGGC TGGAGGGCGC GGTGCATGCA
GCCGTCGGAG GACAGCACCG GGGGGTGGTC ATCCAGCTAC ATGGAATCAA CGCAAACATG
ACCGAGGGCG GCATGTTCGT CCGACTCGCT GATCGACTTG CACACGCCGG CTTTCATGTT
TTGCGGTTCT CCTTCCGCGG CCACGGGGGA AGCGGAGGGA CCCAGCGTGG CGTGACGATC
GCCGGCGAGC TGCTCGACCT CCAGGCCGCG GTCGAGTACG CGGAGGAGCA GTTGCCAGGT
CGCCTGTCGA TCGTGGCGTC GAGCTTCGGA GCGGTATCGG CCTCGCTCTC GCTGCCCTGG
TTGGCCGACC GCCTGAACAG GCTCGTCCTG TGGAATCCGG TACTCGACCT CCGGCGGACA
TTCCTGACAC CGGAACTGCC GTGGGGACGA GAGAACTTCG GCCCCGATCA GCAGAAGCTG
CTGTCAGGTC AGGGGTTCCT GGTGCTCGAC GGGGAGTTCG AGGTCGGCCG GGTGCTGTTC
GACGAGTTTG ATCACTATCG GCCGCTGGAC TCCCTGATGG CGACCGCTGC ACCGGCGCTC
GTGGTACACG GCGATCGGGA CACCGCGGTC TCGTACGAGA TCGCGTGGCA GGCAGCCTGC
GCCAGACCCC ACACCGAGTT TCACACCGTC GAAGGTTCGG ATCACGGCTT CGACACCCGA
GAACGAGAGG ACGAGGCAGT CGCAGTCACA GTGAGGTGGC TCGTTGGCGA CAAGGGCCGA
GCATGA
|
|---|
| Protein sequence | MQRVELTSID GVRLEGAVHA AVGGQHRGVV IQLHGINANM TEGGMFVRLA DRLAHAGFHV
LRFSFRGHGG SGGTQRGVTI AGELLDLQAA VEYAEEQLPG RLSIVASSFG AVSASLSLPW
LADRLNRLVL WNPVLDLRRT FLTPELPWGR ENFGPDQQKL LSGQGFLVLD GEFEVGRVLF
DEFDHYRPLD SLMATAAPAL VVHGDRDTAV SYEIAWQAAC ARPHTEFHTV EGSDHGFDTR
EREDEAVAVT VRWLVGDKGR A
|
|---|
| |