| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3305 |
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| Symbol | |
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| ID | 3904091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 3914294 |
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| End bp | 3916366 |
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| Gene Length | 2073 bp |
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| Protein Length | 690 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637880630 |
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| Product | Type IV secretory pathway VirD4 components-like |
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| Protein accession | YP_482391 |
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| Protein GI | 86741991 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000882445 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.114382 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCCCGC GGGGCGAACC GGGCGCGGGG GTGATGCCCG ATCCTGCGCT GCTGCTCGTC
GGTGTCGCGG TGCTGGCGGG CGTGGGCGGG GTGTGGGCGG GCGCGCAGAC CGCCGCGTTG
CTGTTCGGGG CGCATGAACC GCTGCCGGTC GGGTTGGGCG CGGCGGTGGT GGCGGTGCCG
CGTCTCGTCC TGCGTCCGGG TGATCCGGCG CGGGCCTGGC CGGCGGAGGC CGCGGTCCTG
CTGCCGGGGC CGGTGGGCTA CTGGGCCGGA AGCGTCGTGC CGATGGCGGT CGCGGTGCTG
TGCGGCGGGG TGCTGTTCTT CCTGCTGCAG GGCCGGGTCG GGGTGGCTCG TCGGCGGCGG
ATGGGCCTGG ATCCGGAGGC GCGGTTCGCC CGGCTGTGGG AGATCGCCCC GATGTGGGTC
CGCCGGCCGG TCCGGGGCCG GATGATCCTC GGTCGGGCCC GGAGCGGGAT CGTTACCCGG
TTGCTTGCGA CCGAGGACGC GTCCCTGCCG GTGGATGACG CGGTGCCGCG GCTGCTGCAC
CGGCGGGTTG CCCGCCGCCG GGGTGACCGG GGGGCGGTGC TGGTCGTCGG TCCGTCCCGC
TGCGGGAAGA CCGCGGCGTT GGCGGTGCCG GCGATCCTGG AGTGGGACGG CCCGCTGATC
GCCCTGTCGG TGAAGACGGA CCTGCTGGGC GCGACCGTGC GCCGGCGTCG GGCGCTCGGG
CAGGTGCGGG TCTTCGACCC TACCGGTGTC ACCGGGGAAC TGTCGGCGAC CTGGTCGCCG
CTGGCGGAGT CCACCGGGCT GGCCGGGGCG CGGCTGGCCG CCCGGTCGAT CGCGAACAGC
ACCGACTGGA CCTCCTCCGG ATCGGACATG AGTTTCTGGA CTACCGCCGG TGAGGACCTT
CTCGGCCTGC TGTTCTGGGT CGCCGCCACC GCCGGGCTGG GGATGGACGC GGTGGTCGGT
TGGACGACGA GCATGGACCG CGACGGGGTG ATGCGTTTCG CCCAGGCCTT CGCCCGTCAC
GATGACCCGG CGATCCGGGT GGACGGCGAG CAGGTGCTGG CCGGTCTGAG CGCGGTGTGG
AAGACGGATC CCAAGCAGGT CTCGTCGGTG TTCCTCGTGG CCCGGCAGAT GATCCGGCCG
TGGCAGGAAC CGTCGGTGCA GTATTCCGCG GCCGGGTCGG AGATCGGCCT GGACTGGCTG
CTCGGTGACG AGCCCGACGA CGAGCCCGAC ACCGCCCTCG ACCCGTTCAC CGACAACAAC
CCGTTCACCG ACGGCGATCC GTTCACGGAG GATTTCGGTG ACGCCGGGCA GCCGGGGGAC
GGGCCGCGGC GGCGGTCGAA CAGCGTCTAT CTGTGTGCGG ATCTCGACGG GGCCGAACGG
TTGGCGCCGG TGCTCGGGGG CCTGGTCGAT GATCTGATCC GCTCGGTGTA TACCCGGGTC
GGGGTGACAG GTAAGCCGTT GGACCCGCCA CTGCTCGTCG TCATCGACGA GGCGGGGAAC
TGGCCGATGA AGAATCTGCC CGGCCGGATC TCCACCTGCG CGGGCATGGG CATCCAGCTG
ATGCTCGTCT ACCAGAGCAA GGCGCAGATC GACGCGGCCT ACGGCAGCAA AGCCGACGTC
ATCGTGTCCA ACGCGGTCAC GAAGGTCTTC TTCTCCGGGC TGTCGGACAA GTCGACCCTG
GACTACGCCG CCTCGCTGCT CGGGCAGGAG CATGTCGCCG CGCGCAGCCT GTCCAGTGAT
ATCGCGCCGG GTGGCGGACG GCAGGGTATC AACGACGCGC CGACCAGGCT GGAACTCCTC
CCGGCGCATC TGCTGCGCCA GGTGGCGCCG GGGCAGGCGT TGCTGCTGCA CAACACGCTC
CCGCCCGTGC ACCTGCATGG ACGCTACTGG TTTCGGGACC CGGCGCTGCT CGCCCTCGCC
GCCGGGGAGC CGCCCCCGGC CCGGCCCGCG GCGCAGGGCG TGCGGCCGGC CGCGCCCCGT
GAGGGGTTTG GTCGGGTGGT GCGGGCGGTT CGGGTGGTGC GCGTGCGCGG GCTGTGGAAC
CGCCGACACC GGTCGAACGG AACCGGCCGA TGA
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| Protein sequence | MSPRGEPGAG VMPDPALLLV GVAVLAGVGG VWAGAQTAAL LFGAHEPLPV GLGAAVVAVP
RLVLRPGDPA RAWPAEAAVL LPGPVGYWAG SVVPMAVAVL CGGVLFFLLQ GRVGVARRRR
MGLDPEARFA RLWEIAPMWV RRPVRGRMIL GRARSGIVTR LLATEDASLP VDDAVPRLLH
RRVARRRGDR GAVLVVGPSR CGKTAALAVP AILEWDGPLI ALSVKTDLLG ATVRRRRALG
QVRVFDPTGV TGELSATWSP LAESTGLAGA RLAARSIANS TDWTSSGSDM SFWTTAGEDL
LGLLFWVAAT AGLGMDAVVG WTTSMDRDGV MRFAQAFARH DDPAIRVDGE QVLAGLSAVW
KTDPKQVSSV FLVARQMIRP WQEPSVQYSA AGSEIGLDWL LGDEPDDEPD TALDPFTDNN
PFTDGDPFTE DFGDAGQPGD GPRRRSNSVY LCADLDGAER LAPVLGGLVD DLIRSVYTRV
GVTGKPLDPP LLVVIDEAGN WPMKNLPGRI STCAGMGIQL MLVYQSKAQI DAAYGSKADV
IVSNAVTKVF FSGLSDKSTL DYAASLLGQE HVAARSLSSD IAPGGGRQGI NDAPTRLELL
PAHLLRQVAP GQALLLHNTL PPVHLHGRYW FRDPALLALA AGEPPPARPA AQGVRPAAPR
EGFGRVVRAV RVVRVRGLWN RRHRSNGTGR
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