| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3199 |
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| Symbol | |
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| ID | 3906165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 3792135 |
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| End bp | 3793400 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637880523 |
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| Product | carbamoyl phosphate synthase small subunit |
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| Protein accession | YP_482285 |
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| Protein GI | 86741885 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0505] Carbamoylphosphate synthase small subunit |
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| TIGRFAM ID | [TIGR01368] carbamoyl-phosphate synthase, small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00261776 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCACTC CCACCACGAC GCCGACGCGA GCGGTCCTGA TGCTGGAGGA CGGTCGCAGC
TTCGTCGGCG AGGCGTACGG GGCGATCGGC GAGACCTTCG GCGAGGCCGT GTTCTCCACC
GGGATGACCG GCTACCAGGA GACGCTGAGC GATCCGTCGT TCCACGGCCA AGTCGTCATC
ATGACCGCCC CGCACATCGG CAACACCGGC GTCAACGACG AGGACTACGA GTCCGAGCGG
ATCCAGGTCG CCGGGTTCGT CGTGCGTGAC CCCGCCCGGC GGGCCTCCAA CTGGCGCGCC
CGGGGCACGC TCGACGACGA GCTGGCCGCG GCCGGTGTGG TGGGGATCAG CGGGATCGAC
ACCCGGGCGC TGACCCGTCA CCTGCGTGAG CTCGGCTCGA TGCGGTGCGG GATCAGCAGC
GTGCTCGACG CCGACGCCGA CGCCGACGCC GACGGTGGCC CGGTCGGCCC GGGCCCGGGT
TCCGGCGCGG ACGGCGAGCG GGCGGCGGCG CTCGACGCCC TGCTCGACCG GGTCCGCGCC
TCCCCGGAGA TGCTCGGCGC GGATCTCGCG CCCCGGGTCT CCACCCCTAC CCCCTATGTG
GTGGAGGCGG TGGCGGGCGC CGCGCTGTTC AAGGTCGCCG CGCTCGATCT CGGCATCAAG
CGCGCGACGC CGGCCGCCAT GGCCGCGCTG GGCTGCGAGG TGCATGTGCT GCCGGCCCGC
ACCACCGGCG AACAGCTGCT GGCGCTGGAA CCGGACGGGG TGTTCCTGTC GAACGGTCCC
GGCGATCCGG CGGCGGCGGA CTATGCGGTT GACGCGCTGC GGACGGTGCT GCGGGCCGGT
GTCCCGGTGT TCGGGATCTG TTTCGGGCAC CAGCTGCTGG CCCGCGCTCT TGGCTTCGAG
ACGTACAAGC TCACCTACGG CCACCGCGGC GTGAACCAGC CGGTCGGGGA TATGGCGACC
GGGCGGATCG CGGTCACCAG CCAGAACCAC GGCTTCGCCG TGCGGGCGCC GCTCACCGGG
GTGACCGACA CCCCGTTCGG CCGGGTGGTG GTCAGCCACC GCGGCCTCAA CGACAACGTC
GTCGAGGGAT TGGAGTGTCT GGACGTGCCG GCCTTCAGCG TGCAGTTCCA TCCGGAGGCC
GCGCCGGGGC CGCATGATGC CTCCCCGTTG TTCGAGCGGT TCCGCGCTTT GATGGCGGAC
ACCCGGGAGG GTGGCCGGGA GCGGAGTGAG CGATCTGTGC GGGAGGCCGG TCATGCCGAA
GCATGA
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| Protein sequence | MSTPTTTPTR AVLMLEDGRS FVGEAYGAIG ETFGEAVFST GMTGYQETLS DPSFHGQVVI
MTAPHIGNTG VNDEDYESER IQVAGFVVRD PARRASNWRA RGTLDDELAA AGVVGISGID
TRALTRHLRE LGSMRCGISS VLDADADADA DGGPVGPGPG SGADGERAAA LDALLDRVRA
SPEMLGADLA PRVSTPTPYV VEAVAGAALF KVAALDLGIK RATPAAMAAL GCEVHVLPAR
TTGEQLLALE PDGVFLSNGP GDPAAADYAV DALRTVLRAG VPVFGICFGH QLLARALGFE
TYKLTYGHRG VNQPVGDMAT GRIAVTSQNH GFAVRAPLTG VTDTPFGRVV VSHRGLNDNV
VEGLECLDVP AFSVQFHPEA APGPHDASPL FERFRALMAD TREGGRERSE RSVREAGHAE
A
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