| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3005 |
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| Symbol | |
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| ID | 3905502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 3563167 |
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| End bp | 3565431 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637880325 |
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| Product | methylmalonyl-CoA mutase |
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| Protein accession | YP_482091 |
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| Protein GI | 86741691 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.598546 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.356991 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACGG ACAGCTCGCA ACGTGCCACG ATGATCCCGG ACTTCTCCGC GGTGGAGCTG
GGCACCACGC CGGCCGGGGC GGACACGGCG GAGGGTGAGT GGCGGGCCGC CCTGGAGGCG
GCGACCGGCA AGGACGCCGA CGCGCTGACC TGGGATACCC CCGAGGGCAT CGCGGTGAAG
CCGCTCTACA CCGCCGCCGA CACCGCGGGC CTGGACTTCC TGGGCACCTA CCCGGGGATC
GCGCCCTTCC TGCGCGGCCC ATACCCGGCG ATGTACGTCA CCCAGCCGTG GACCATCCGC
CAGTACGCCG GGTTCTCCAC CGCCGCCGCG TCGAACGCCT TCTACCGGCG CAACCTCGCC
GCCGGGCAGA AGGGCCTGTC GGTCGCCTTC GACCTGCCGA CCCACCGCGG CTACGACAGC
GACCACCCAC GGGTCACCGG CGACGTCGGC ATGGCCGGCG TCGCCATCGA CTCCATCCTC
GACATGCGCC AGCTGTTCGA CGGTATCCCG CTGGACAAGA TGAGCGTGTC GATGACCATG
AACGGCGCCG TGCTGCCGGT GCTGGCACTC TACATCGTCG CGGCCGAGGA GCAGGGGGTG
GCCCCGGGGC AGCTCGCCGG GACCATCCAG AACGACATCC TCAAGGAGTT CATGGTCCGC
AACACCTACA TCTACCCGCC GCAGCCGTCG ATGCAGATCA TCTCGGACAT CTTCTCCTTC
ACCTCGCGGC GGATGCCGCG GTTCAACTCG ATCTCGATCT CCGGCTACCA CATGCAGGAG
GCCGGGGCGA CGGCCGATCT GGAGCTCGCC TACACCCTGG CCGACGGGGT CGAGTACATC
CGGGCAGGGC TGGGCGCGGG GCTGGACATC GATGCGTTCG CACCAAGGCT GTCGTTCTTC
TGGGCGATCG GCATGAACTT CTTCATGGAG GTCGCCAAGC TGCGCGCGGC CCGGCTGCTG
TGGTCGCGGC TGGTCAACCA GTTCACCCCG AAGAGCGCCA AGTCGCTGTC GCTGCGGACC
CACTCGCAGA CCTCGGGTTG GTCGCTGACC GCCCAGGACG TGTTCAACAA CGTGGTGCGC
ACCTGCGTGG AGGCGATGGC CGCCACCCAG GGGCACACCC AGTCGCTGCA CACCAACGCC
CTCGACGAGG CGCTGGCCCT GCCGACGGAC TTCTCGGCCC GTATTGCCCG CAACACCCAG
CTGCTGCTGC AGCAGGAGTC CGGCACCACC CGGGTGATCG ACCCGTGGGG CGGCAGCTAC
TACGTCGAGC GGCTCACCCA CGACCTGGCC CGCCGGGCCT GGGAGCACAT CGACGAGGTC
GAGGCCTCGG GCGGCATGGC GCAGGCCATC GACGCTGGGA TCCCGAAGAT GCGTATCGAG
GAGGCCGCCG CCCGCACCCA GGCCCGCATC GACTCCGGCC GCCAGCCGCT GATCGGAGTG
AACAAGTACC GCGTCGACGC GGACGAGGGC ATCGAGGTGC TCAAGGTCGA CAACTCGGCG
GTGCGCGCCG AGCAGATCGA GAAGCTGCGC CGGCTGCGCG CCGACCGTGA CCCGGCCGCG
GTGGAGGCGG CGCTGCACGC CCTGACCGCG GCGGCCGACG CGGCCCGCGA CGGGCGCCGC
GGCCCCGGGC TGGAGCAGAA CCTGCTGACG CTCGCCGTCG ACGCGGCCCG GGCTCAGGCG
ACGGTCGGGG AGATCTCCGA CGCGCTGGAG AAGGTCTACG GGCGTCACGC GGGCCAGATC
CGTACCATTT CCGGGGTGTA CCGGGACGAG GCGGGACCCG CCGGTAACAT CGTCGCCGCC
CGCGAGGCCG CCGCCGCCTT CGAACGCGCC GAGGGTCGCC GGCCCCGGAT CCTGGTCGCG
AAGATGGGCC AGGACGGTCA CGACCGCGGC CAGAAGGTGA TCGCCACCGC GTTCGCCGAC
CTCGGCTTCG ACGTGGACGT CGGCCCGCTG TTCCAGACCC CGGCCGAGGT CGCCCGCCAG
GCCGTCGAGG CGGACGTCCA GATCATCGGC GTCAACTCGC TGGCCGCCGG CCACCTCACC
CTGGTGCCCG CGCTGCGCGA GGAGCTCGCC GCGCTCGATC GGCCCGACAT CCTCATCGTG
GTCGGCGGGG TCATCCCTCC CGGCGACTTC GACGAGCTGC GGGCCGCCGG CGCCGCCGCG
ATCTTCCCGC CCGGCACGGT CATCGCCGAC GCCGCGCTGG ACCTGCTCGC GACCCTGTCG
GCCCAGCTCG GTCACCCCGC TCACCCCGCT CACCCCGCGG CCTGA
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| Protein sequence | MSTDSSQRAT MIPDFSAVEL GTTPAGADTA EGEWRAALEA ATGKDADALT WDTPEGIAVK
PLYTAADTAG LDFLGTYPGI APFLRGPYPA MYVTQPWTIR QYAGFSTAAA SNAFYRRNLA
AGQKGLSVAF DLPTHRGYDS DHPRVTGDVG MAGVAIDSIL DMRQLFDGIP LDKMSVSMTM
NGAVLPVLAL YIVAAEEQGV APGQLAGTIQ NDILKEFMVR NTYIYPPQPS MQIISDIFSF
TSRRMPRFNS ISISGYHMQE AGATADLELA YTLADGVEYI RAGLGAGLDI DAFAPRLSFF
WAIGMNFFME VAKLRAARLL WSRLVNQFTP KSAKSLSLRT HSQTSGWSLT AQDVFNNVVR
TCVEAMAATQ GHTQSLHTNA LDEALALPTD FSARIARNTQ LLLQQESGTT RVIDPWGGSY
YVERLTHDLA RRAWEHIDEV EASGGMAQAI DAGIPKMRIE EAAARTQARI DSGRQPLIGV
NKYRVDADEG IEVLKVDNSA VRAEQIEKLR RLRADRDPAA VEAALHALTA AADAARDGRR
GPGLEQNLLT LAVDAARAQA TVGEISDALE KVYGRHAGQI RTISGVYRDE AGPAGNIVAA
REAAAAFERA EGRRPRILVA KMGQDGHDRG QKVIATAFAD LGFDVDVGPL FQTPAEVARQ
AVEADVQIIG VNSLAAGHLT LVPALREELA ALDRPDILIV VGGVIPPGDF DELRAAGAAA
IFPPGTVIAD AALDLLATLS AQLGHPAHPA HPAA
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