| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2654 |
|---|
| Symbol | |
|---|
| ID | 3906327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 3133374 |
|---|
| End bp | 3134732 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637879979 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_481745 |
|---|
| Protein GI | 86741345 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0469483 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0556402 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGTG CGTCCACGAC CCCCCCCGAC CGCACCGGTG GCCTGCGCCT GCCGGTGACC
GCCCCCTCCG CGGAGGGCGA GGTGGTCGAG CTCTGTCGGG AGATGCTCCG CTTCGAGTCG
GTCAACCGCG GCAACGGCGA CGGCAACGAG CGCCCGATCG CGGAGTACGT CGCGGCGAAG
CTCGCGGAGG TGGGCCTTGA GCCGACCCTG CTGGAGTCGG CCCCGGGCCG CACCAGCGTG
GTGACCCGGG TGGAGGGGGC GGATCCCTCG CGTGCGCCGC TGCTCGTCCA CGGTCATCTC
GACGTGGTGC CGGCGGATGC CAGCGAGTGG CGCCTGCCGC CGTTCGCTGG CGAGGAGGCC
GACGGCTGCC TGTGGGGTCG GGGCGCGGTG GACATGAAGG ACATGGACGC GATGACCCTC
GCGGTCATCC GCGACATCGT CCGCACCGGC CGCAGGCCAC CCCGGGACCT CGTCGTCGCC
TTCGTCGCGG ACGAGGAGGC CGGCGGCGTC CTCGGGGCGC GCTGGCTCGT CGAGAACCAT
CCCGACCTGT TTGCCGACTG CTCCGAGGCG ATCAGCGAAG TCGGTGGGTT CTCCTACACC
GTCTCCGACG ACCTGCGCCT TTACCTCATC GAGACGGCGG AGAAGGGCAT CGCCTGGATG
AAGCTGACCG CTGCCGGCCG GGCCGGCCAC GGTTCGATGA TCAGCGATGA CAACGCGGTG
ACGGCGCTGT GCGAGGCGGT GGCGAGGCTC GGCCGGCACA CCTTCCCGCT GGTCATGACC
CCGACGGTCC GGGTGTTCCT GAACTCCCTC GGGGAGGCGC TCGGCATCGA GTTCGACCTG
GACGACCTGG AGGCGACCGT CGCGAAGCTC GGCCCGATCG CCCGGATGAT CGGTGCCACG
TTGCGTAACA CCGCCAACCC GACCCAGCTC GAGGCCGGTC ACAAGGTCAA CGTGATCCCG
GGCGAGGCCA CCGCCTACGT CGATGGTCGC TATCTGCCCG GTCAGGAGGA GGAGTTCATC
CGCCAGCTCG ACGAGATCCT CGGGCCGGAC ATCCGTCGCG AATGGGTCGT CCACGACCAG
GCGTTGGAGA CCAGCTTCGA CGGCGCGCTG GTGGAGGCGA TGGCCGCGTC GCTGCGCGCC
GAGGACCCGA TTGCCCGGGC CGTGCCCTAC ATGCTCTCCG GCGGCACGGA CGCGAAGTCC
TTCTCCCGGC TCGGCATCCG CTGCTTCGGG TTCTCCCCGT TGCTGCTGCC GCCCGACCTG
GACTTCTCCG GCATGTTCCA CGGGGTGGAC GAACGGGTGC CGCTCGACTC GCTGCGCTTC
GGCGTCCGCG TCCTCGACCG CTTCCTGCAC GCCTGCTGA
|
|---|
| Protein sequence | MASASTTPPD RTGGLRLPVT APSAEGEVVE LCREMLRFES VNRGNGDGNE RPIAEYVAAK
LAEVGLEPTL LESAPGRTSV VTRVEGADPS RAPLLVHGHL DVVPADASEW RLPPFAGEEA
DGCLWGRGAV DMKDMDAMTL AVIRDIVRTG RRPPRDLVVA FVADEEAGGV LGARWLVENH
PDLFADCSEA ISEVGGFSYT VSDDLRLYLI ETAEKGIAWM KLTAAGRAGH GSMISDDNAV
TALCEAVARL GRHTFPLVMT PTVRVFLNSL GEALGIEFDL DDLEATVAKL GPIARMIGAT
LRNTANPTQL EAGHKVNVIP GEATAYVDGR YLPGQEEEFI RQLDEILGPD IRREWVVHDQ
ALETSFDGAL VEAMAASLRA EDPIARAVPY MLSGGTDAKS FSRLGIRCFG FSPLLLPPDL
DFSGMFHGVD ERVPLDSLRF GVRVLDRFLH AC
|
|---|
| |