| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2597 |
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| Symbol | |
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| ID | 3906503 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 3064426 |
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| End bp | 3066210 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637879922 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_481688 |
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| Protein GI | 86741288 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.158438 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCCGA CGCCGCAGCC CGATGGTCAG GTACGCAGCG ACATCTGCGG GCCTCGGCCC
GGCCTGCCGG ACCCGCGGGC ACTCGCCCGG TGGGAAGAGG CGCTGCTGTG TCTGCGGGTG
TTCGACACGG CGCCGATCAT ATTCGCGGTC TTCGACCGCG GCCTGCGCTA CCGGGCGGTG
AACCAGGCGG CTGCCAGGGC CTCCGGCCTG TCCGCCGAGG AGATGATCGG TGGGTATGGC
CCGGAGGTGC TCCCGGGCAT AGACCCTCTC GGCTGGGAGC GGCCCCGCCG GGTGTTGGCG
ACCGGTGAGG CGATCCTCGA CGAGGAGATC ATCGGAGCGA CCCCGGCGGA CCCGTCGAAT
CCGCGCATCT GGCGGGCCTC CTACTATCCC CTGCATGACT CGACCGGGGC CAGAATCGCG
GTCGGCGTGA CGGCGGTGGA CGTGACCGAC GAGCGTCGCG CGCAGGCCGA ACGTGACCTG
GTACTGCGGC GGTTGCGGCT GCTGAGCCGG GCGAGCGGGC TGCTCGGCGC GTCGCTGGAC
CTGTCGGCCA CCTTGCGGGA GATGGTCACG CTGGTCGTCC CGGAATTCGC CGACGCCTGC
GAGCTGTACC TCGCCGACGA GCCCTGCCCC CCGGGGGCCG AACCCGACCC GCCGCTGCTT
CGCCGAGCCG TGTGGGCACA CTCCCCCGAC CTGCCCCGAC CATCCCCCGA CCTGCCCCTC
CCCCCACCAG ACACAAGAAG CAACCTGACC GGACGCCAGG TCGGACGGGT ATTCCTCACC
CGCCAACCGG TCCGCCTCGA CCTGGACGAA CGGCTCCCCG ACGCACCCGA CGCACCCGAC
GCACCCGCGA GCAGCGTGGC CGCCCTGTTC CGGCATTCCC ACCTTCGATC CGCGATCATC
GTCCCGCTGC TGGTCGGCCC GCACTGCCTG GGAACCGTCG GGTTCGCCGT CACCGCGGCC
CGCCCCTACC GCGAGCAGGA CACCCAGACC GCCACCGAAC TGGGCAGCCG GATCGCAACC
GCGATCGCGA ACGCCCACGC CTTCGACCAC CAGCGGACCG CCGCCCTGAC CCTGCAACGC
GCCCTGCTGC CCCGCGACAT CCCCACCCTG GACGACCTCG ACCTGGCCTG GCGCTACCAG
CCCGGCACCA GCGGCACCGA GGTCGGCGGC GACTGGTTCG ACGTCATCCC CCTGCCGGCC
GGACGGGTCG CGCTGGTCAT CGGCGACGTC ATGGGCCGCG GCCTGAACGC CGCCGCCGCC
ATGGGCCAGC TACGCACCGC CGCCCGCACC CTCGCCCGCC TCGACCTGCC CCCCGCCGCC
CTGCTGACCG AACTCGACGC CGTCACCCGC AGCATCGACA CCATCGCCAG CGTCGCCTAC
GTCATCCAGG ACCCGGCCAC CAGCACCCTG ACCGTGGCCA ACGGCGGCCA CCTCCCCCCC
GCCCTGCGCC ACCCCGACGG CACCGCCGAC CTCCTCGACG ACCCCCACGG GATCATCCTC
GGCGTCACCG AACAGACCTT CACCGAAACC CGCCACCGCT TCCCCCCCGG CTCCACCCTC
GCCCTCTACA CCGACGGCCT CGTCGAATCC CCCACCGTCG ACATCGGCGA GGGCTGCCGA
CGCCTGCTGC GCATCCTCAC CGAAACAGCC GACCTGCCCA CCACCGCGGA CCGGCTACTG
ACCCTCCTCA ACCGCAACGA CGGCAACGAC GGCTACGACG ACGACGTCAC CCTCCTCCTC
GCCCACGCCC GGCGGGGTCG GTGCGGCCGG TTCAGGGGGC GGTGA
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| Protein sequence | MNPTPQPDGQ VRSDICGPRP GLPDPRALAR WEEALLCLRV FDTAPIIFAV FDRGLRYRAV
NQAAARASGL SAEEMIGGYG PEVLPGIDPL GWERPRRVLA TGEAILDEEI IGATPADPSN
PRIWRASYYP LHDSTGARIA VGVTAVDVTD ERRAQAERDL VLRRLRLLSR ASGLLGASLD
LSATLREMVT LVVPEFADAC ELYLADEPCP PGAEPDPPLL RRAVWAHSPD LPRPSPDLPL
PPPDTRSNLT GRQVGRVFLT RQPVRLDLDE RLPDAPDAPD APASSVAALF RHSHLRSAII
VPLLVGPHCL GTVGFAVTAA RPYREQDTQT ATELGSRIAT AIANAHAFDH QRTAALTLQR
ALLPRDIPTL DDLDLAWRYQ PGTSGTEVGG DWFDVIPLPA GRVALVIGDV MGRGLNAAAA
MGQLRTAART LARLDLPPAA LLTELDAVTR SIDTIASVAY VIQDPATSTL TVANGGHLPP
ALRHPDGTAD LLDDPHGIIL GVTEQTFTET RHRFPPGSTL ALYTDGLVES PTVDIGEGCR
RLLRILTETA DLPTTADRLL TLLNRNDGND GYDDDVTLLL AHARRGRCGR FRGR
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