| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2526 |
|---|
| Symbol | |
|---|
| ID | 3904670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2987095 |
|---|
| End bp | 2987766 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637879854 |
|---|
| Product | HhH-GPD |
|---|
| Protein accession | YP_481620 |
|---|
| Protein GI | 86741220 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0177] Predicted EndoIII-related endonuclease |
|---|
| TIGRFAM ID | [TIGR03252] uncharacterized HhH-GPD family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACGA CTACGCCGCC TGTCGGGACT ACACCGACTA CACAACCTGA TCAACGACCG
GGCGGCGGAT GCGATGCGGT CGGCTACGGT GTTGGCGTGG GATTGCATCT GAGCCAGATC
GCCGAGGCGG ACGAGTTGCT GACGAGCGAT CCGTTGGCGT TGCTGATCGG GATGGTGCTG
GATCAACAAA TTCCTCTTGA GCGTGCCTTT GCCGCGCCCC ATGAGCTGAC CCGACGCCTC
GGCCAGCCGC TGGATGCGGA GGAGTTGGCG AAGTACGACC CTGACGCCCT GGGCGCGATC
TTCTCGCAGG TGCCGGCGCT GCACCGGTTC CCTGGCTCGA TGGCCAAGCG GGTACAGGCC
ATGTGTCAGC TCATCGTGGA CACCTACGAC GGCGACGCGG CCCGCGTGTG GACGACCGCG
GCCGACGGTA AGGAACTGCT GAGGCGGGTG GCGGCGCTGC CGGGGTTCGG TCAGCAGAAG
GCCAAGATTT TTGTGGCGCT GCTGGGTAAA CAGCTTGGCG TGACCCCACC GGGATGGCGG
GAGGCCTCCG CGCCGTTCGG GGACGAGGGC ACGTTCCGCT CCATCGCGGA CATCACTGAC
GTTGCCACCC GTGACCAGGT CCGGGAGTAC AAGAAGGCGA TGAAGGCCGC CGCCAAGGCA
CAGGCGGGCT GA
|
|---|
| Protein sequence | MPTTTPPVGT TPTTQPDQRP GGGCDAVGYG VGVGLHLSQI AEADELLTSD PLALLIGMVL
DQQIPLERAF AAPHELTRRL GQPLDAEELA KYDPDALGAI FSQVPALHRF PGSMAKRVQA
MCQLIVDTYD GDAARVWTTA ADGKELLRRV AALPGFGQQK AKIFVALLGK QLGVTPPGWR
EASAPFGDEG TFRSIADITD VATRDQVREY KKAMKAAAKA QAG
|
|---|
| |