Gene Francci3_2500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_2500 
Symbol 
ID3904878 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp2951434 
End bp2951970 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content75% 
IMG OID637879830 
ProductMarR family transcriptional regulator 
Protein accessionYP_481596 
Protein GI86741196 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.129036 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATGCC CGCCGGATGG CTCCGCCCTG CCGCCCTCGG TTCCCGACCC CGCGGGAGTG 
CCGGGCGTGG ACGTCGACGA GGTCACCGAT GCGGTCCTGA CGGCATCCCG GCTGCTGGTG
GCGGTGTCGG CCCGCTCGAT CGCCGCCGTC GGCGAGGATG TCACCCTGCC GCAGTTCCGG
ATGCTCGTCG TGCTCGCCGG GCGTGGACCG CAACGCGCCG GGGAGCTCGC CGAGTCGCTT
GACGTGCACC CCTCCACGGC CACCCGGATG GCCGACCGGC TCGTCGTTGC CGGGCTGATC
CTCCGAGTCG GCAACCCGCG TAACCGGCGG GAGGTCATCG TCGAGCTGAC CGGGCCGGGC
CGGCGCCTCG TCGACGAGGT CACCGCCCGG CGCCGGGCCG AGATCGCGAC GATCGTCGCC
CGGCTCGCTC CGGACGTGCG GGGCAGCCTG GTCGGCGCGT TGCGCGCCTT CGCGGACGCC
GGCGGCGAAC CGGCGGCGAT ATCCGGTCGG GACGCCTCGG CCCTCGGCTG GACCTGA
 
Protein sequence
MACPPDGSAL PPSVPDPAGV PGVDVDEVTD AVLTASRLLV AVSARSIAAV GEDVTLPQFR 
MLVVLAGRGP QRAGELAESL DVHPSTATRM ADRLVVAGLI LRVGNPRNRR EVIVELTGPG
RRLVDEVTAR RRAEIATIVA RLAPDVRGSL VGALRAFADA GGEPAAISGR DASALGWT