| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2401 |
|---|
| Symbol | |
|---|
| ID | 3906384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2780253 |
|---|
| End bp | 2781104 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637879731 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_481497 |
|---|
| Protein GI | 86741097 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0476592 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0197415 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGT CCCGCGGCGC CACCGGCCGT GACACCGGCC GCAGACCGGA GCGGTTCTGC
GCTCGCAGCA GCTCTACGAT CCGTTCCATG CGGGTACTGG TCGTCGAGGA CGAGGCGCGC
ACCGCCGCCC TGCTCCGCCG TGGCCTGGTC GAGGAGGGCT ACGCGGTCGA CGTCGTCGGT
GACGGCGCCG ACGCGGTCTG GCAGGCGACC GAGATCGGCT ACGACGCGAT CGTCCTGGAC
CTCATGCTTC CCGGTCTCGA CGGATTCGAG GTGTGCCGCC GCCTGCGCGA GGCGGGCCGC
TGGGCCCCGG TGCTCATGCT CACCGCCCGG GGGGACGTTG ACGACCGTAT CCGCGGTCTC
GACGCGGGTG CCGACGACTA CCTGCCCAAG CCGTTCAGCT TCGGGGAACT GACCGCCCGG
CTGCGGGCGC TCGTGCGGCG CGGGGCCGTG GAACGCCCCA CCGTCCTGCG GATCGGGGAT
CTTCGCCTCG ACCCGGCCGA GCACCGCGTC CTGCGGGCTG GATCGCCACT CGACCTGTCC
GCGAAGGAGT TCGCGCTCCT CCACCTGCTC ATGCGCCATC CCGACGAGGT TCTGACCCGT
ACCTATATCG TCGATCACGT CTGGGACTTC GCCTTCGACG GCACCTCCAA CATCGTCGAC
CAGTACGTGC GCTACGTCCG CCGGAAGATC GACATTCCGG ACGGTCCGTC GCTCATCGAG
ACCGTCCGCG GGGTCGGATA CCGGCTACGG ACCCCGGCCG AGACGCCGCC CGGGAGGTCC
CGCACACCTG ATGTGTCTGC CGCGCCCGGT GCGTCTGCCG CGCCCGGCCC GGTCGTCGAC
GGGGGATCGT AG
|
|---|
| Protein sequence | MTESRGATGR DTGRRPERFC ARSSSTIRSM RVLVVEDEAR TAALLRRGLV EEGYAVDVVG
DGADAVWQAT EIGYDAIVLD LMLPGLDGFE VCRRLREAGR WAPVLMLTAR GDVDDRIRGL
DAGADDYLPK PFSFGELTAR LRALVRRGAV ERPTVLRIGD LRLDPAEHRV LRAGSPLDLS
AKEFALLHLL MRHPDEVLTR TYIVDHVWDF AFDGTSNIVD QYVRYVRRKI DIPDGPSLIE
TVRGVGYRLR TPAETPPGRS RTPDVSAAPG ASAAPGPVVD GGS
|
|---|
| |