Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_2255 |
Symbol | |
ID | 3905023 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 2632544 |
End bp | 2633887 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 637879586 |
Product | ABC transporter related |
Protein accession | YP_481352 |
Protein GI | 86740952 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00103135 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00208025 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGACCGACA CCACCGTGAC CAGCCGGCCG ATCCTCGGCG AGGCCCCACC GCCGGAGCTC CCCGCCCCCA GCGGGGGGGT GCACTTCCGT GGGATCATGC GCCGGTACGG CGGCACCGGG CGGCCCGCGC TCGACGTCGC CGACCTGCAT CTGCCGCACC GGTCCTTCAC GGTGATCGTC GGGCCGTCGG GATGCGGGAA GTCGACCGCG CTGCGGGTCA TCACCGGGCT GGAGACCCCC GACGAAGGCC GGTTGACGAT CAACGGGGTG GACGTCACGG CGACGCCACC GGGCGCGCGC GGGGTCTCGA TGGTCTTCCA GGACTTCGCG CTCTACCCAC ATCTCACCGT CGAGCAGAAC ATCGCCTTCA GCCTGCGGCT CGAGGCGAAG CACAACCGCG GCCGCCTCGG ACTTCTGCGC CGGGGGGCGG GCGGGGCGGG CCCGAGCCGT GGCGAGATCT CCCGCCGGGT CACCGAGGCC TGCGTCCTGC TGGGGCTCGC CGACCTGCGA CACCGCCGAC CTGGGCAGCT CTCCGGTGGT GAGCGCCAGC GTGTCGGCCT CGCCCGCGCG ATCGTGCGCC GCCCGAGTGT GCTCCTGCTC GACGAGCCCC TCTCCGCGCT CGACGCCCAG CTACGCCAGC AGGCCCGGGC CGAACTCGTG CGCCTGCACC GCGAGCTGGG CAACACCGTC GTTCTCGTCA CCCACGATCA GCTCGAGGCG CTGTCCATGG GCACCCATCT GGTGGTCATG AACGGCGGAC GGGTGGCGCA GGCCGGCACG CCCGAGCAGG TCTACCGCCG GCCGGCCGAT GTCTTCGTCG CCGCGTTCGT CGGCAGTCCG GCGATGAACC TGCACCTGGT CGAGGTGACG AACGGCGGTG GGGCGCTCGC GGCACCGGGG CTGTCCGCGC GCCTGGCCGG ACCGCTGACG CTGCCCCGGG CCTGGCTCGG CTGGCGGCCG GGGGACGGCG TCATCGAGGC CGGGCCCGAT CGGGCCGCGG CAGCGGGCGG CCTGGCCGGT GCGGGCCTGG CCGGTGCCGG CCTGGTCATG GAGGGGCTGG TCGACGTGGT CGAGTTCACC GGGGACGTGG TCGTCGTCCA CTGCGTGAGC GGGGCCGCCG CGGCGGGGGA GACCGGCGAG TGGGACGCCG GCCCGGACGA GGTCGGCCCG GCCCGGTGGG CGGTGACCGT CCCGGCCCAG GCCGGCGTCC CGGACGTCGG CACCCCGCTA CGGGTCCGGG TCCCCGCGCG CCGACTGCAC CTGTTCGACC CGGTCAGTGG GCAGCGCGTC GACGAGATCG ATGACGACGC CGACGACCTC GCCGTCGCCG ACGAGCCGAC ATGA
|
Protein sequence | MTDTTVTSRP ILGEAPPPEL PAPSGGVHFR GIMRRYGGTG RPALDVADLH LPHRSFTVIV GPSGCGKSTA LRVITGLETP DEGRLTINGV DVTATPPGAR GVSMVFQDFA LYPHLTVEQN IAFSLRLEAK HNRGRLGLLR RGAGGAGPSR GEISRRVTEA CVLLGLADLR HRRPGQLSGG ERQRVGLARA IVRRPSVLLL DEPLSALDAQ LRQQARAELV RLHRELGNTV VLVTHDQLEA LSMGTHLVVM NGGRVAQAGT PEQVYRRPAD VFVAAFVGSP AMNLHLVEVT NGGGALAAPG LSARLAGPLT LPRAWLGWRP GDGVIEAGPD RAAAAGGLAG AGLAGAGLVM EGLVDVVEFT GDVVVVHCVS GAAAAGETGE WDAGPDEVGP ARWAVTVPAQ AGVPDVGTPL RVRVPARRLH LFDPVSGQRV DEIDDDADDL AVADEPT
|
| |