| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2157 |
|---|
| Symbol | |
|---|
| ID | 3906757 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 2526089 |
|---|
| End bp | 2527858 |
|---|
| Gene Length | 1770 bp |
|---|
| Protein Length | 589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637879492 |
|---|
| Product | metal-dependent hydrolase |
|---|
| Protein accession | YP_481258 |
|---|
| Protein GI | 86740858 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3454] Metal-dependent hydrolase involved in phosphonate metabolism
[COG3639] ABC-type phosphate/phosphonate transport system, permease component |
|---|
| TIGRFAM ID | [TIGR02318] phosphonate metabolism protein PhnM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.321413 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCGC TGCTGGGGCT GCTCGGCCTG GCCGGGTGGG CCTTCGCCGC GCTGTCGATC
AACGTCGCGA CGCTGATCGA CAGCGGGCGG AACGCGGCCG ACTTCGCCGC CCGGATGCTC
CCCCTGGACT TCCCCACCGC GGGGGAGCTG CTGCGCCTGA CCGGCCAGAC CATGTCGATC
GTCATCTGCG CCACGCTGCT GTCGGTGGTG CTCAGCACGG GGCTTGCGGT CTTGGCTGCC
GGGAACACGG CGCCGCACCG CGGTGCACGG TTCGGCGCGC GGACAGTGAT CGTCGCGGCC
CGCGCGGTGC CGGACGTGGT GCTGGCGACC GTGTTCTTTC GGCTGTTCGG GTTCGGCGCG
CTGGCCGGGG TTCTCGCGAT GGGACTGCAT TCGGTCGGCA TGGTCGGCAA GCTCTACGCC
GACGCGGTCG AGCAGATCGA CGAGGGCCCG CGTGAGGCCA TGCGCGCGGG CGGCGCGGGC
CGTGGGAGCT GGTGGCCGGC GTGCTGCCGC AGGTGCTGCC CGCGTTCGTG GCGACCGCGC
TGCACCGGCT GGACATCAAC CTGCGGGTCT CGGTCGTCCT CGGCTTCGTG GGTATCGACG
GGCTCGGCCG CGCCATCGCG ACCGGCTGCT GATCGTGTGT GTGCGGGGCA TCCCCGATCT
GGTGCTGGCG ATCGTGTTCG TGGTGATCAC CGGGCTCGGT GCGGTCGCCG GGGTGCTCGC
GCTGGGCGTC GGTGCTGTCG GGCTGCTCGG CAAGCTCGTC GCGGACTCCG TGGAAGAGGT
CGACCCGGGT GTCGAGGACG CGCTGCGCGC CACGGGATCG AGAACGAGCA GCTGCCCCGA
CCGGGCGCCG AGCTGCCGAT CGAGTTCGCG CTGCTGTCCT TCGAGGGCAA GCTGCGGGCC
GCGGGCGTGA CGACCGTGTT CCACGGCATC TCCTTCGAGG ACACCCACCA CGACATCCCG
CGCAGCGTGG GCCAGGCGGA GAAGACGTGC GAGGCGATCG ATGCTTATAC CGGCGGGCTC
GTCGACCACC GGATCCTGTA CCGGCTCGAC GTGCGCAGCC CGGAAGCGCT GTCCGCGCTG
GCGCGGCGGT TGGACCAGGT TCCCGACGGC GCCCTGGTCT CCCACGAGGA CCACACCCCG
GGCCAGGGCC AGTACGCCGT CCGCGAGCAC TACGAGCGCT ATTTGATGGG CAGCCGCGGC
ATGTCCGACG CGGAGGCTCG CGAGCATGTC GACCAGCTCA TCGCCGACCG GGACGGCAGG
CTCGACATCC GCGAGGAGGC CCTGGTCTGG CTCGCCGCGC GCTCGGCGCG AATCCGGCTG
CTCGGGCACG ATCCCAGCTC GGCCGCCGAG ATCGCCGAGC TGCGGGACCG CGGCTGCGCG
GTCGCCGAGT TCCCCACCAC GATCGAAGCG GCGGAAGCCG CCCGCGCCCA CGGACTTCCC
GTCGTCATAG GCGCCCCGAA CATCCTGCGG GGACGTTCCC ACAACGGCAA CGCCTCCGGC
CGTGACCTGG TCGGCCGCGG CCTGGTGACC GCGCTGGTGT CGGACTACCT GCCCTCCGGT
CTGCTCGCGG CCGCCATGCT GCTCGCCGAG CAGGGGCTCG CCACCCTGCC GGCCGCCATC
GGCCTGGTGA CCGCCGGGCC GGCCGAGGTC GCCGGACTTC CCGACCGCGG TCGGCTCGAG
CCGGGGCTGC GCGCTGACTT TGTGCTGGTC GAGCCGCGCC GCCCGTGGCC GGTGGTGCGG
TCCGTGTTGT CATCCTGGGG TGTCTGGTGA
|
|---|
| Protein sequence | MAALLGLLGL AGWAFAALSI NVATLIDSGR NAADFAARML PLDFPTAGEL LRLTGQTMSI
VICATLLSVV LSTGLAVLAA GNTAPHRGAR FGARTVIVAA RAVPDVVLAT VFFRLFGFGA
LAGVLAMGLH SVGMVGKLYA DAVEQIDEGP REAMRAGGAG RGSWWPACCR RCCPRSWRPR
CTGWTSTCGS RSSSASWVST GSAAPSRPAA DRVCAGHPRS GAGDRVRGDH RARCGRRGAR
AGRRCCRAAR QARRGLRGRG RPGCRGRAAR HGIENEQLPR PGAELPIEFA LLSFEGKLRA
AGVTTVFHGI SFEDTHHDIP RSVGQAEKTC EAIDAYTGGL VDHRILYRLD VRSPEALSAL
ARRLDQVPDG ALVSHEDHTP GQGQYAVREH YERYLMGSRG MSDAEAREHV DQLIADRDGR
LDIREEALVW LAARSARIRL LGHDPSSAAE IAELRDRGCA VAEFPTTIEA AEAARAHGLP
VVIGAPNILR GRSHNGNASG RDLVGRGLVT ALVSDYLPSG LLAAAMLLAE QGLATLPAAI
GLVTAGPAEV AGLPDRGRLE PGLRADFVLV EPRRPWPVVR SVLSSWGVW
|
|---|
| |