| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1989 |
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| Symbol | |
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| ID | 3903697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 2336039 |
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| End bp | 2338207 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637879325 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_481092 |
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| Protein GI | 86740692 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.965966 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTCTG AGCCGAGGAG AACCTTGTCG GACGTTTCGT CGGACTACGC ACTGGATGCC
GGTTTCGATT CGCTACTGGG CACGCAACTG ATCGATTTCA GTCCGACGGC GATGGTAATT
ATCGATCCGG ATCTGCGGGT GCGACGGAGC AACCGGTCCT TTCGGGAAAT ATACGGCCTG
TCTCCCGAGC AACTGGCGGG AACATCCATC CCCGAGCTGC TGCCGGATAT GGACCCGCGG
GTGTGGAAGC TTGCCCGGTG GGTCCTGGCC AGCGGTGAAT CAGTTGAAGA CACGGAGATC
ATCGGCAGGA GCGTGGCTTT CCCGCAGGAG GAACGCACCT GGCGCTTTTC GCACTTTCCG
CTCCGGGACC GTGAGGGGGT GCCCGCGGCG GTTGGCGTGA CGCTGGTCGA TGTGACGGAT
CAGCGCCGTG CCGAGCGGAA GCATGCGGAA GCAGAGCGGC GACTGCGGCT GCTCACCCGG
GCGAGCACAC TCGTCGGGCG ATCCCTGGAA CTGGACGCCA CACTGGCGAG TATAGCCGAT
TTTATGGTAC CGGAATTCGC CGACACCTGC AGCGTGTACC TGCTCGACGA ACCCCTTGAC
ACAGACGCCC GACCGGAGCT GTTGGAATTG CGGCGCGCCA TAAAAACACG CGTTTCCGGT
CCGCCCCTGC AAAGTTGCGA CATCCCGTTC TCAGCCGCCG GAGAGATCCT TTACTGCCAC
CGAAACTCTC CGATCTACCA AGCCTTTGCG TCGGGTCGCC CGTTTCACCA CGCGGCCGAC
GATGAATCGT TGATCAGCGG ATATCAGACT CCTGGATTCC TCGACTACTT CCGGCGGCTG
CTGCTGCGTT GGGGGATCGC GGTGCCCCTG CTGGTGGGGC GCTACTTTCA TGGGGTCATG
GTTGTACATG TCGGCGTTTC CGGGCGTACC TACACCGACG ACGACGTCGA GATGGCCGCC
AACCTTGGTG GACGTATCTC AGCCGCCATC GCCAATGCCC GCGCGTACGC TCGCGAGCGG
GAGGTTTCTG TCACGCTGCA GCGCAGCCTG CTTGCACCCG ACATCCCGGC CGTGGCCGGA
ATGGACATCG CCTGGCGGTA CGAGCCGGGC TCCCTTCCCG GCCGGTCGCC CTGCGCCGAG
CCGGGTCCGC CGATCGACGC CGAGGTGGGC GGGGACTGGT TCGACCTCAT CCCGCTCTCG
GCGGGTCGGG TAGCTCTCGT CATCGGAGAC GTGGCCGGCC GCGGTGTGAC CGCCGCCGCC
GTCATGGGTC AACTCCGCAC CGCCAGCCGG GCGTTCGCCT CACTCGATCT GCCCGCCGAC
GACGTACTCA CCCACCTGGA CAACCTTGCC CAGACCATCG GGGCAGGGCC TGACGGTGCC
TTGGCGAGCT GCGTCTACGC GATCTTTGAG CCCACCACCG CGACGATAGT CCTCGCCAAC
GCCGGCCACC CCCCTCCCGC CCTGCGTGAT CCCGATGGCC GGGTCCGCCT CCTGACCGGC
GGGGGCGGCG CGTTTCTCGG TATCGGCGGG CAAGTTTTCG TCCAGACCTG CTACCCGTTC
CCCGTCGGGG CGACGCTCGC GCTCTACACC GACGGCCTCG TCGAGTCACG CGATATCGAT
ATCTTCCAGG GAATCGGCCG GCTACAGCAC GCTCTCGCGG ACGCCGGCAC CGCGGACGCC
ACCGCCGACC GGCTGATGCG CCTGGTCGAT CAGGCCAATC GAGACGACGA CGTGGCGCTC
CTGCTCGTCC GGGCCGCCGC GGCCATCAAC ACTCGCACCC TTACCATCCC TCTCACCCTC
GACCTCAGGG CCGTCGGACA GGCTCGCCAC GCCGTCAACG CCGCGCTGCG TCGCTGGCAG
CAGCCCGAAA CCATCGAGAC CGCGGAACTA CTGGTGAGCG AGATCGTCAC CAATGCGATC
CGCTATTCCC GAGTCCCCGG CGAACTCGTG CTCCGCAGCG TCCCGACGGC CCTCTACATC
GAGGTCTCCG ACAGCGACAG TCACCTCCCC CGTGTCCTCC ACCCCAACGA GCAGGAAGAA
CACGGTCGTG GCCTGATCCT CGTCGATGCA CTCGCTGCCC GGTGGGGCAC CCGCCCTACC
CACTCCGGCA AGACGGTCTG GTGCCAACTC GACACCGGCA CTGACACCGG CCCGGAAATC
TTCACCTAG
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| Protein sequence | MTSEPRRTLS DVSSDYALDA GFDSLLGTQL IDFSPTAMVI IDPDLRVRRS NRSFREIYGL
SPEQLAGTSI PELLPDMDPR VWKLARWVLA SGESVEDTEI IGRSVAFPQE ERTWRFSHFP
LRDREGVPAA VGVTLVDVTD QRRAERKHAE AERRLRLLTR ASTLVGRSLE LDATLASIAD
FMVPEFADTC SVYLLDEPLD TDARPELLEL RRAIKTRVSG PPLQSCDIPF SAAGEILYCH
RNSPIYQAFA SGRPFHHAAD DESLISGYQT PGFLDYFRRL LLRWGIAVPL LVGRYFHGVM
VVHVGVSGRT YTDDDVEMAA NLGGRISAAI ANARAYARER EVSVTLQRSL LAPDIPAVAG
MDIAWRYEPG SLPGRSPCAE PGPPIDAEVG GDWFDLIPLS AGRVALVIGD VAGRGVTAAA
VMGQLRTASR AFASLDLPAD DVLTHLDNLA QTIGAGPDGA LASCVYAIFE PTTATIVLAN
AGHPPPALRD PDGRVRLLTG GGGAFLGIGG QVFVQTCYPF PVGATLALYT DGLVESRDID
IFQGIGRLQH ALADAGTADA TADRLMRLVD QANRDDDVAL LLVRAAAAIN TRTLTIPLTL
DLRAVGQARH AVNAALRRWQ QPETIETAEL LVSEIVTNAI RYSRVPGELV LRSVPTALYI
EVSDSDSHLP RVLHPNEQEE HGRGLILVDA LAARWGTRPT HSGKTVWCQL DTGTDTGPEI
FT
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