| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1518 |
|---|
| Symbol | cobN |
|---|
| ID | 3904984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 1814985 |
|---|
| End bp | 1819079 |
|---|
| Gene Length | 4095 bp |
|---|
| Protein Length | 1364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637878855 |
|---|
| Product | cobaltochelatase subunit CobN |
|---|
| Protein accession | YP_480623 |
|---|
| Protein GI | 86740223 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1429] Cobalamin biosynthesis protein CobN and related Mg-chelatases |
|---|
| TIGRFAM ID | [TIGR02257] cobaltochelatase, CobN subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0461692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCCTG TGCAGACTCC TCCCACCGAT CCGTCCGACG ACCCTTCCGA CGATCCGTCG
ACCGCGTTCG CCCGCGAAGC CGGGGAGACA CCAGGAGCCG GGGAGACGGA GGTTGACGCG
GTCGTCCTGC TGCTGTCGAC GTCCGACACC GACCTACTCT CCGCGCGGGC GAGCGGAGCC
AGCTACCGCC TCGCCAACCC GGCCCGGCTC TCCGTCGCCG ATCTCCCGGC GCTGACCAGC
GGTGCCGATG CGGTCGTGGT GCGCATCCTC GGCGGCCGGC GGACCTGGGA GGAGGGGCTC
GACACGCTGC TCGCCGGCCC GCGCCCGGTG GTCGTGCTCG GTGGCGAACA GACCCCGGAC
GCGGAGCTCA TGGCCGTCTC CACGGTGCCC GGCGGCATCT GTGCCGAGGC ACACGCCTAC
CTAACCCAGG GCGGTCCGGC CAACCTCGGC GAGCTGCACC GATTCCTCGC CGACACCCTG
CTACTGTCCG GTACCGGATT CGCCCCACCG GTGACCATCC CGGCCTGGGG GGTGCTCGAC
CGGGCCGCGG ACGCATCAGC CAGCCGGGAC GCATCAGCCA CCCCGGACGC ATCAGCCACC
CCGGACGCAT CAGCCACCCC GGACGCATCA GCCAGCCGGG ACGTCCCGGA CGTCCTCGCG
GGGAACGCGG TGCGGCCGGT CGCGGTGCGG CCGGTCGCGG TGCGGCCGGT CGCGGTGCGG
CCGGTCGCGG TGCGGCCGGT CGCGGTGCGG CCGGTCGCGG TGCGGCCGGT CATCGGTGTC
CTGTACTACC GCGCGCACCA CGTCGCCGGG AACATCGCGT TCGTCGAGGC ACTCTGTGCC
GCGGTCGAGC GTGCCGGCGG GGATCCGCTG CCGGTGTACT GCGCGTCGCT GCGCGCCGCC
GAACCCGAGT TGCTCGCCAC CCTCGGGCGG GCGGACGCGC TGATCGTCAC CGTGCTCGCC
GCGGGTGGCA GCCAGCCGGC GCACTCCTGC GCCGGAGGCG ACGACGAGGC GTGGGACGTC
GGCGCGCTGG CCGCGCTGGA CATCCCGATC CTGCAGGGAC TGTGCCTGAC CAGCGGCCGG
GCGACGTGGG CGGAGTCGGA CGACGGGCTG TCCCCGCTGG ACGCGGCGAC ACAGGTGGCG
ATCCCCGAGT TCGACGGGCG CCTGATCACC GTGCCGTTCT CCTTCAAGGA GATCGATGCG
GATGGGCTGA CAAGCTACGT CGCCGACACC GAACGCGCCG ACCGGGTGGC CGGCATCGCC
GTCGCGCACG GCCGGCTGCG GCACGTCCCA CCGGCCGAAC GCCGGGTGGC GCTCATGCTC
TCGGCCTACC CGACGAAGCA CTCCCGGATC GGCAACGCGG TGGGCCTCGA CACCCCGGCG
AGCGTCGTGC GCCTGCTGCG GGCGATGCGC GCGGCTGGAT ACGACATCGG GCCCGACGAC
GGCCCGGACG CGCTGCCGGG GGTCACGGCC GAGGACGGTG ACGCCCTGAT CCACGCGATC
ATCGCCGCGG GCGGGCAGGA TCCGGCCTGG CTGACCGAGG AGCAGCTCGC CGGCAACCCG
GTCCGGATCA GCGCGGCGCG GTACCGGGCG TGGTTCGACA CCCTGCCCGC CGACCTGCGG
GAGAGCGTCG AACGGCATTG GGGGCCCGCG CCCGGCGAGC TGTACGTCGA CCGGTCCGCG
AATCCGGACG GGGAGATCGT GCTCGCCGCG CTGCAGGCCG GCAACATCGT GCTGTTGGTC
CAGCCGCCAC GCGGCTTCGG GGAGAACCCG GTCGCCATTT ATCACGATCC CGGCCTGCCG
CCGAGCCACC ACTACCTCGC CGCCTACCGG TGGCTCGCCG GCGGCTCCGG CGGCTCCGAT
AGTTCCGGCG GCTTCGGCGC GCACGCCGTC GTCCATCTGG GTAAGCACGG GACGCTGGAG
TGGCTGCCCG GCAAGACCGT GGGCATGTCC GCGTCCTGTC CGACCGACGC GGCGATCGGC
AACCTGCCGT TGATCTACCC GTTCCTCGTC AACGACCCGG GCGAGGGCAC GCAGGCGAAG
CGCCGGGCGC ACGCGACCCT GGTCGATCAC CTGGTTCCGC CGATGGCCCG CGCGGAGAGC
TACGGCGACC TGGCCCGCCT GGAACAGCTG CTCGACGAGC ACGCCACCAT CGCCGCCATG
GATCCGGCGA AGCTGCCGGC CATCCGGGCG CAGATCTGGA CGCTGATCCA GGCCGCCCGG
CTCGATCACG ACCTGGGACT GACCGACCGG CCGCACGACG CCGAGTTCGA CGACTTCCTG
CTGCACGTCG ACGGGTGGCT GTGCGAGGTG AAGGACGCGC AGATCCGCGA CGGCCTGCAC
GTGCTCGGCG AAGCACCGAC CGGCGGGGCG CGGATCAACC TGGTGCTCGC GATGCTGCGG
GCCCGGCAGA TGTGGGGCGG GCGCGTCACC CTGCCGGGGC TGCGGGAGGC CCTCGGGCTC
GTCGAGGACG ACCGGGCGGC CCGCGGCACG GTCGACGCCG CCGAGGCGAC GGCGCTCGCC
CTGGTAACGG CGATGGAGGA ACGCGCCTGG GACCCGTCGG CCGCATCCGA CGTGGTGACG
ACCGTCCTCG TCCCCCCTCC CTCGCCAGCG ACCATCCCCT TGCCCCCCTT GCCTATCCAG
AGGGATAAAC CGGACACAAA AGCCTCTGGA AAGGCAAGGA AAGTCCACGG CCCGGCAGGC
ATGGACGCGG ACGCGGAGAC CGACCCGGTC CGGGAGACGG TGGCGGCCGT GCTGCGGTTC
GCCGCCACGG AGATCGTGCC GCGGCTCGCC CGGACCACCG ACGAGGTCAC CGCCGTGCTG
CACGCCCTCG ACGGCGGCTA CGTCTCGGCC GGTCCCAGCG GCTCGCCGCT GCGGGGTCTG
GTCAACGTGC TGCCCACCGG GCGGAACTTC TACTCGGTCG ACCCGAAGGC CATCCCCAGC
CGGCTCGCCT GGGAGACGGG CCAGGCAATG GCGACCTCCC TGCTCGATCG GTACCGGGCC
GACACCGGCA CCTGGCCCGA GTCGGTGGGC CTGTCCGCCT GGGGAACCAG CGCGATGCGC
ACCTCCGGCG ACGACGTGGC CGAGGTGCTC GCCCTACTCG GCATCCGTCC GACCTGGGAC
GAAGCGTCGC GGCGGGTCAG CGGGCTCGAA CCGATCGACC TCGCCGAGCT CGGCCGGCCC
CGCATCGACG TCACCGTGCG CATCAGCGGC TTCTTCCGGG ACGCGTTCCC GTACGTGGTG
GCGATGCTCG ACGACGCGGT CCGGCTCGCC GCCGGCCTCG ACGAGACCGA CGAGGACAAC
TTCGTGCGCG CCCATGCCCG TGCGGACCTC GCCGGGCACG GCGACGAACG GCGGGCCACC
CTGCGTATCT TCGGCTCCCG GCCGGGGGCG TACGGCGCCG GGCTGCTGCC TCTGATCGAC
AGCCGGAACT GGCGCGATGA CGCCGACCTC GCCGAGGTAT ACGCGACGTG GGGCGGCTAC
GCCTACGGCC GCGGGGTCGA CGGCACCCCC GCCCGGGAGG ACATGGAGTC GGCCTACCGG
CGGATCGCCA TCGCCGCGAA GAACGTCGAC ACCCGCGAGC ACGACATCGC CGACTCCGAC
GACTACTTCC AGTACCACGG CGGCATGGTC GCAACCGTAC GCGCGCTGAC CGGCCGGGCG
CCGGCTGCCT ACATTGGCGA CAGCACCCGG CCGGAGGCGG TCCGCACCCG AACGCTGTCC
GAGGAGACCT CCCGGGTCTT CCGCGCCCGG GTGGTGAACC CGCGGTGGCT CGCGGCGATG
CGCCGGCACG GCTACAAGGG GGCGTTCGAG ATGGCCGCCA CCGTCGACTA CCTGTTCGGC
TACGATGCCA CCGCCGGCGT GGTCGCGGAC TGGATGTACG AACGGCTCGC CACAACCTAC
GCACTGGACC CGGAGAACCA GAAGTTCTTC GCCGAGTCCA ACCCCTGGGC GCTGCACGGC
ATCACCGAAC GGCTGCTGGA GGCCGCGGCG CGCGGCCTGT GGGAGCACCC GGAGGCTGCG
ACCCTCGACG CGCTGCAGGA GCTGTACCTG CGTACCGAGG GCGACCTGGA GGACGGTCCC
ACCGGCGACG CCTGA
|
|---|
| Protein sequence | MSPVQTPPTD PSDDPSDDPS TAFAREAGET PGAGETEVDA VVLLLSTSDT DLLSARASGA
SYRLANPARL SVADLPALTS GADAVVVRIL GGRRTWEEGL DTLLAGPRPV VVLGGEQTPD
AELMAVSTVP GGICAEAHAY LTQGGPANLG ELHRFLADTL LLSGTGFAPP VTIPAWGVLD
RAADASASRD ASATPDASAT PDASATPDAS ASRDVPDVLA GNAVRPVAVR PVAVRPVAVR
PVAVRPVAVR PVAVRPVIGV LYYRAHHVAG NIAFVEALCA AVERAGGDPL PVYCASLRAA
EPELLATLGR ADALIVTVLA AGGSQPAHSC AGGDDEAWDV GALAALDIPI LQGLCLTSGR
ATWAESDDGL SPLDAATQVA IPEFDGRLIT VPFSFKEIDA DGLTSYVADT ERADRVAGIA
VAHGRLRHVP PAERRVALML SAYPTKHSRI GNAVGLDTPA SVVRLLRAMR AAGYDIGPDD
GPDALPGVTA EDGDALIHAI IAAGGQDPAW LTEEQLAGNP VRISAARYRA WFDTLPADLR
ESVERHWGPA PGELYVDRSA NPDGEIVLAA LQAGNIVLLV QPPRGFGENP VAIYHDPGLP
PSHHYLAAYR WLAGGSGGSD SSGGFGAHAV VHLGKHGTLE WLPGKTVGMS ASCPTDAAIG
NLPLIYPFLV NDPGEGTQAK RRAHATLVDH LVPPMARAES YGDLARLEQL LDEHATIAAM
DPAKLPAIRA QIWTLIQAAR LDHDLGLTDR PHDAEFDDFL LHVDGWLCEV KDAQIRDGLH
VLGEAPTGGA RINLVLAMLR ARQMWGGRVT LPGLREALGL VEDDRAARGT VDAAEATALA
LVTAMEERAW DPSAASDVVT TVLVPPPSPA TIPLPPLPIQ RDKPDTKASG KARKVHGPAG
MDADAETDPV RETVAAVLRF AATEIVPRLA RTTDEVTAVL HALDGGYVSA GPSGSPLRGL
VNVLPTGRNF YSVDPKAIPS RLAWETGQAM ATSLLDRYRA DTGTWPESVG LSAWGTSAMR
TSGDDVAEVL ALLGIRPTWD EASRRVSGLE PIDLAELGRP RIDVTVRISG FFRDAFPYVV
AMLDDAVRLA AGLDETDEDN FVRAHARADL AGHGDERRAT LRIFGSRPGA YGAGLLPLID
SRNWRDDADL AEVYATWGGY AYGRGVDGTP AREDMESAYR RIAIAAKNVD TREHDIADSD
DYFQYHGGMV ATVRALTGRA PAAYIGDSTR PEAVRTRTLS EETSRVFRAR VVNPRWLAAM
RRHGYKGAFE MAATVDYLFG YDATAGVVAD WMYERLATTY ALDPENQKFF AESNPWALHG
ITERLLEAAA RGLWEHPEAA TLDALQELYL RTEGDLEDGP TGDA
|
|---|
| |