| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1454 |
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| Symbol | |
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| ID | 3903186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 1744945 |
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| End bp | 1745703 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637878791 |
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| Product | ribosomal large subunit pseudouridine synthase B |
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| Protein accession | YP_480560 |
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| Protein GI | 86740160 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00702616 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGTAGCG GTGACCGCCC GGACGGGCCC CAGGACCAGG GCATCCGGCT GCAGAAGGTG
CTGGCCGCCG CCGGGGTGGG CTCCCGCCGG CACGGCGAGG AGTTGATCGC TGCCGGTCGG
GTCCGGGTGG ATGGCACCGT GGTGCGCGAG CAGGGCCGCC GGGTCGATCC CGAAACCGCC
CTCATCGAGG TCGACGGTGA GCGGATCGTC ACCCGGACGG GCCTGGTCCA CTTGGCGTTG
AACAAGCCGC GCGGGGTGCT CTCGGCGATG TCGGACGACC GGGGTCGGCC GACGATCGCG
GATCTGCTCA CGGAGTTCGG CGGCGGGCTG TTCCACGTCG GCCGGCTCGA CGCCGACAGC
GAGGGGCTGC TGCTCGTCAC CAACGACGGA GAGCTCGCGC ACCGGCTCAC CCATCCCTCG
TTCGCCGTCC CCAAGACCTA CCTCGTCGAG GTGTCCGGTC CGCTGCGCCG TGACGTCCTG
CGCCAGCTGC GCGCGGAGGT CGAACTCGAC GACGGCCCGG TGCGCGCGGA CTCGGCGCGC
ATCGTCGACA ACGCGAACGG ACGGGTGATG GTCGAGGTCG TCGTGCACGA AGGGCGCAAG
CACGTCGTCC GCCGGATGAT GGACGCCGTC GGCCACCCGG TGCATCGACT GGTGCGCACC
CGGTTCGGGG CGGTGTCGCT GGGAACCCTG CGCGCCGGGC GGGCCCGTCA CCTCACCCGT
CACGAGATCG GCGCCCTGTA TCACGGCGTC GGTCTCTAG
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| Protein sequence | MSSGDRPDGP QDQGIRLQKV LAAAGVGSRR HGEELIAAGR VRVDGTVVRE QGRRVDPETA
LIEVDGERIV TRTGLVHLAL NKPRGVLSAM SDDRGRPTIA DLLTEFGGGL FHVGRLDADS
EGLLLVTNDG ELAHRLTHPS FAVPKTYLVE VSGPLRRDVL RQLRAEVELD DGPVRADSAR
IVDNANGRVM VEVVVHEGRK HVVRRMMDAV GHPVHRLVRT RFGAVSLGTL RAGRARHLTR
HEIGALYHGV GL
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