Gene Francci3_1397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_1397 
Symbol 
ID3903378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand- 
Start bp1680059 
End bp1680802 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content72% 
IMG OID637878734 
Productspheroidene monooxygenase 
Protein accessionYP_480503 
Protein GI86740103 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.371333 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones2 
Fosmid unclonability p-value0.0000931715 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGCACGC TTGTCACCGT CGACTTCTGG CGGGTGCCCC GGCGACGGAT CGGTTACGCC 
CTGGCGCGGA TGGCCGCCGA CCGTACCGCC CTGCGGCACA CACCGGGACT GACCTTCGCA 
AAACTGCTGG GCACCGGTTC GGCGAGCAGT TTCACCCTGC GCGACGCCGA TCCGTGCCAG 
TGGGCGATGG TCGCCGTCTG GTCCTCCCCG TCGGCGGCCC GTTCCTTCGA ACGATCCGCG 
CCGGTGCGGG CATGGTCGTC GCTGGCCGAA GAACGCTGGC GGATCGACCT TCACCCGCTG 
TCGTCACGTG GGCGGTGGTC ACGGCAGGAG CCCTTCGGCG ACCCGGCGGC GTCGAACGTT 
CCGCCTCCCG CGAGCGCCCC CGCGGCGGTC GCGGTGATCA CCCGGGCCCG CATCGCCCTG 
CGGCACACCC TCGCCTTCCG CCAAGCGGTG CCGGCGGTGG CGGTCGACCT CGCCGAGGCC 
GAGGGTCTGA TCTTCGCGGC TGGCATCGGG GAGGCGCCGA TCGGCTTACA GGGAACGTTC 
AGCCTCTGGC AGGACGCGGC GTCGCTGCGC AGGTTCGCTT ACGGCCGCCC CGCGCACAGC 
GAGGTCGTCC GGCGCACACC GATGGTCGGC TGGTACAGCG AGGAACTGTT CGCGCGGTTC 
GCGGTGCTCG GCTCGCGGGG GACGCTGGGC GGGCGGGATC CTCTCCTGCA GGTCAGCCCC 
GGGCCGACGT TGACGCCGCG TTGA
 
Protein sequence
MSTLVTVDFW RVPRRRIGYA LARMAADRTA LRHTPGLTFA KLLGTGSASS FTLRDADPCQ 
WAMVAVWSSP SAARSFERSA PVRAWSSLAE ERWRIDLHPL SSRGRWSRQE PFGDPAASNV 
PPPASAPAAV AVITRARIAL RHTLAFRQAV PAVAVDLAEA EGLIFAAGIG EAPIGLQGTF 
SLWQDAASLR RFAYGRPAHS EVVRRTPMVG WYSEELFARF AVLGSRGTLG GRDPLLQVSP 
GPTLTPR