| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1300 |
|---|
| Symbol | |
|---|
| ID | 3904349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 1554173 |
|---|
| End bp | 1556215 |
|---|
| Gene Length | 2043 bp |
|---|
| Protein Length | 680 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637878633 |
|---|
| Product | heparinase II/III-like |
|---|
| Protein accession | YP_480406 |
|---|
| Protein GI | 86740006 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5360] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCGT CGGTTCCGCT CGGTCGCTAC CTGCGCACCA CCGCGGGACT GCGACCGGTC
CAGCTCGGTG CCCGTGTCCG GCTGCGCGGG CAACGGGCCG TCCTGAGTCG CCACCCGGGC
CTGGGCGAGA TGCTGCTGCG CGGCAGGCCG CCAGCGGAAT CCTGGCCGAT CGGGTTCCTG
CCGTTCGACG GCAGATGCCC GCCGGCTCGG CCGATGTTCG ACGAGATCGT CGCGGGCCGC
CTAACCCTGC TCGGTCACTC CCGCGATCTG TGTCCCCGGG ACTCCAACAC TCCCGCTACT
GGAACCCCCG TACCCCCCAC CCCCACGACC GGCACCCCCG CGGGGGCCGG CGCCGCCGCG
GCCCCCGCCC GATGGGACTG GAGGCAGGCC GACGCTCCGC TGCTGTGGCG CTACCATCTG
CACTACTGGG ACTGGGCATG GGCATTCACC ACCGAGGCTG TCCAGGGGCC CGCGATGTTC
GCCCGGCTGT ATCTGGCCTG GCGGACCTCG GTGGCCCTGG GCGATCCGGT TGCCTGGTCG
CCCTACGTCG TGTCACTCCG GGCCTGGACG CTGTGTGCCT TGTGGCCCCG GCTCGCGCGG
GGAACGCCCG CCGAGATGGC GGTCCTCGCC GACCTCGGCG TCTGCCGGTC CTTCCTGCGC
ACTCATCTGG AGACCGACGT CGGCGGGAAC CACCTGCTGA AGAACTACAA GGCGCTGATC
GGGCTGGCGG TCGCCGATGA CGACGCCCGC GGCCGCCGAC GATGGGTCGA CGCGCTGCTG
CGCGAGCTCG ATCGGCAGGT CCTCAGCGAC GGTGGACACT ACGAGCGCTC CCCCACCTAT
CACTGTCAGG TGCTGGCCGA CCTCGACGAC GTCGCCGGGC TGCTCACCGC GGCGGGCCAC
GTGGTGTCCG GCGCCCTGCT CGACGCGGCC GGCAGGATGC GGTCCTGGCT GACGGCCGTA
CTCGGACCGG ACGGCGTGGT TCCCACGCTC AACGACGGGT TCGCGGTGCC CGCCGAGGCC
CTGCGGCTGC TTCTCCCGGC TCCGGTAAGA CCGACGCCGA TCGCAGTCCA GGGTCCGGGT
CCCGTTCCGA TCCCGGCACC GCGCCTGGCC GAGATGCCCA CCTCGACGTC GCAGTCGACC
GTGGGGACCG TGCCCCGTCC GCGGACGCCC GCATCTGACC GGGCCGACGC CCTTCTGCTG
GTCGACAGCG GTCTCGCCGT GCTGACGGCT GGACCGTGGC ATCTGCTCGC CGACGTGGGC
CTGCCCTGTC CCGAGGACCT TCCGGCCCAC GCCCACGCCG ACACCCTCGC GTTTCTGCTC
TGGCACGACG GCCGGCCGCT CCTGGTGGAT ACCGGGACCT CGACCTACGC CCCCGGACCG
GATCGGGACG CCGAACGCGG TACCGCCGCC CACTCGACCG TCATCGTCGA TCACGCCGAC
TCGACCGAGG TCTGGGGCGC GTTCCGGGCG GGCCGCCGGG CCCGTCCCAC TCTTGTCACG
ATGTGCCACC ACGAAAACGT GGCGACGTTG GCCGCCGGCC ATGACGGCTA CCGCCACCTT
CCCGGGCGAC CCGTGCACTG GCGGACGTGG CGACTCGACC CGAGTGGGTT GTCCGTCGAC
GATCGGATCA CCGGGGAGGG CCGCCACCAC GTCGAGGTGC TGTTCCACTT CGCCCCCGGG
GTGTCCGTCA CCGCCGCGGC GGCCGATACC AGGCGAACCA GTACCACCTC GATCGGGACC
ACCTCGATCG GGACCAGCCG GAACGCGGCC ACCCGGAGCG GGGCCACGGA TGCGCTCACG
GTGACCACCT CCCAGGGGCG GCTGGTCCTG CGGGCCGGCG GACCGGGGCG GTGGGTGGTG
CGCTCCACCC GCCGGGCGGT CGGATGGAGC CGTACGGTGC CGGCGTACAC CGCCGCGTAC
GTGATCGATG CCGAGCTGCC TGTCGCGGTA CGCACCACGG TCGTCCACGA AGTCCGCTCC
GGCGGCCCGC GCTCCGGCAA CCTGCGCTCC GGCGACACGG AATCGTCGCC CGCCCGCCTC
TGA
|
|---|
| Protein sequence | MTASVPLGRY LRTTAGLRPV QLGARVRLRG QRAVLSRHPG LGEMLLRGRP PAESWPIGFL
PFDGRCPPAR PMFDEIVAGR LTLLGHSRDL CPRDSNTPAT GTPVPPTPTT GTPAGAGAAA
APARWDWRQA DAPLLWRYHL HYWDWAWAFT TEAVQGPAMF ARLYLAWRTS VALGDPVAWS
PYVVSLRAWT LCALWPRLAR GTPAEMAVLA DLGVCRSFLR THLETDVGGN HLLKNYKALI
GLAVADDDAR GRRRWVDALL RELDRQVLSD GGHYERSPTY HCQVLADLDD VAGLLTAAGH
VVSGALLDAA GRMRSWLTAV LGPDGVVPTL NDGFAVPAEA LRLLLPAPVR PTPIAVQGPG
PVPIPAPRLA EMPTSTSQST VGTVPRPRTP ASDRADALLL VDSGLAVLTA GPWHLLADVG
LPCPEDLPAH AHADTLAFLL WHDGRPLLVD TGTSTYAPGP DRDAERGTAA HSTVIVDHAD
STEVWGAFRA GRRARPTLVT MCHHENVATL AAGHDGYRHL PGRPVHWRTW RLDPSGLSVD
DRITGEGRHH VEVLFHFAPG VSVTAAAADT RRTSTTSIGT TSIGTSRNAA TRSGATDALT
VTTSQGRLVL RAGGPGRWVV RSTRRAVGWS RTVPAYTAAY VIDAELPVAV RTTVVHEVRS
GGPRSGNLRS GDTESSPARL
|
|---|
| |