| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1283 |
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| Symbol | |
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| ID | 3905088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 1534060 |
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| End bp | 1535289 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637878617 |
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| Product | sigma 38 |
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| Protein accession | YP_480390 |
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| Protein GI | 86739990 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGCGTA ACCTGGGTCG ATCCCGAGAA GGAAGTGACG AGATTCCGCC CATGAGTCCT
ACCGTCCTAC CCCGCGAAGC CCAGGTGGAC GAGGTCAAGG ACCTCATCAC CCGGGGCAAG
GAGATCGGGT TCCTCACCAC CGAGGATGTC ACGGTCGCCA TCCAGGCCGC GGAGCTGCCC
CCGGAGCAGG CCGAGACGGT GCTGCAGGTG CTGAACGACG AGGGCATCGA GGTACTCGAG
GCGGGAGGTG AGAGCCCCGA CGAGGCGGAT CTGCTGGCCC GCCGTCGCCG CGAGGAGGAG
GAGCTCGCCC TCAAGGCGCC GACCTCCGAC CCGGTGCGCA TGTACCTCAA GGAGATCGGC
AAGGTCCCCC TGCTCACCGC CGAGGAGGAG GTTGATCTTG CCAAGCGGAT CGAGGCGGGG
CTGTTCGCCT CCGAGAAGCT GGCGGTGGCC ACCAAGAAAA CTTCCCCGCA GATGCGGCGG
GACCTCGAGG CCATCGAACG CGACGGGCAG ATCGCCAAGC GCAAGCTGGT CGAGGCGAAC
CTGCGTCTCG TCGTCTCGAT CGCCAAGCGG TACGTCGGGC GCGGCATGCT GTTCCTGGAC
CTCATCCAGG AGGGCAACCT CGGCCTGATC CGGGCGGTCG AGAAGTTCGA CTACACCAAG
GGCTACAAGT TCTCGACCTA CGCCACCTGG TGGATCCGGC AGGCGATCAC GCGGGCCATC
GCCGACCAGG CACGCACCAT CCGCATCCCG GTGCACATGG TCGAGACCAT CAACAAGCTG
ATCCGCATCC AGCGGCAGCT CCTGCAGGAC CTCGGCCGGG AGCCGAGTCC GGAGGAGATC
GCCAAGGAGA TGGATCTCAC CCCGGACAAG GTGCGTGAGA TCCTCAAGGT CTCACAGGAG
CCGGTGTCGC TGGAGACCCC CATCGGTGAG GAGGAGGACT CCCACCTTGG CGACTTCATC
GAGGACTGCG ACGCCGTCGT CCCGGTCGAC GCGGCCAGCT TCATCCTGCT TCAGGAGCAG
CTCGACTCGG TCCTGCACAC CCTGTCCGAC CGGGAGAAGA AGGTCATCCA GCTGCGCTTC
GGGCTCACTG ACGGGCACCC GCGTACGTTG GAGGAGGTCG GGCGCGAGTT CGGGGTCACC
CGGGAGCGCA TCCGCCAGAT CGAGTCGAAG ACGCTGTCCA AGCTTCGGCA TCCCTCCCGG
TCGCAGAAGC TGCGCGACTA CCTGGAGTAG
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| Protein sequence | MPRNLGRSRE GSDEIPPMSP TVLPREAQVD EVKDLITRGK EIGFLTTEDV TVAIQAAELP
PEQAETVLQV LNDEGIEVLE AGGESPDEAD LLARRRREEE ELALKAPTSD PVRMYLKEIG
KVPLLTAEEE VDLAKRIEAG LFASEKLAVA TKKTSPQMRR DLEAIERDGQ IAKRKLVEAN
LRLVVSIAKR YVGRGMLFLD LIQEGNLGLI RAVEKFDYTK GYKFSTYATW WIRQAITRAI
ADQARTIRIP VHMVETINKL IRIQRQLLQD LGREPSPEEI AKEMDLTPDK VREILKVSQE
PVSLETPIGE EEDSHLGDFI EDCDAVVPVD AASFILLQEQ LDSVLHTLSD REKKVIQLRF
GLTDGHPRTL EEVGREFGVT RERIRQIESK TLSKLRHPSR SQKLRDYLE
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