Gene Francci3_1268 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_1268 
Symbol 
ID3906114 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp1514545 
End bp1515150 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content72% 
IMG OID637878602 
Productputative metalloprotease 
Protein accessionYP_480375 
Protein GI86739975 
COG category[R] General function prediction only 
COG ID[COG0319] Predicted metal-dependent hydrolase 
TIGRFAM ID[TIGR00043] metalloprotein, YbeY/UPF0054 family 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.16283 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGTAT TCGTTGCCAA CGAGTCGGGC GCGAGTGACG TCGACGAGGT GAGGCTGGCC 
GCGCTCGCCC GGTTCGTGCT CGACGCCATG AAGGTGAACC CGCTCGCCGA GCTCTCGGTG
ATGCTGGTAG AGCCGAAGGC GATGACCGAT CTGCACGTCC GGTACATGGG CGAGGAGGGT
CCGACCGACG TCCTGTCCTT CCCGCAGGAC GATGCCTTTG ACGCCTCGTG GTCGGAGTCG
GTCGACGACG ATCCGACTAC CCTGCTCGGC GACGTCGTGC TGTGCCCGGA CGTCGCGCGG
CGGCAGGCGG AGCAGGCCGG TCACTCCTTC GATCGCGAGC TGTCCCTGCT GTGCACCCAC
GGCATCCTGC ACCTGCTCGG CTACGACCAC GCCGAGCCGG ACGAGGAACG CGAGATGTGG
AAGGTACAGA GCCAGCTGCT CGCGTCGTGG GACGGCGCGG ACGGCGCGGA CGGCGCGGAC
GGCGCCCGCG GTGCCGCGGA CGGTGCCGCG GACGGCGGCG AGGGCCGCCG TGGTGACCAG
GGCCGCCGTG GTGACCAGGG CCGTGGCGGT GGCGCCGGAG AGCCCCCTGC CGCGCCCGCA
CGCTGA
 
Protein sequence
MAVFVANESG ASDVDEVRLA ALARFVLDAM KVNPLAELSV MLVEPKAMTD LHVRYMGEEG 
PTDVLSFPQD DAFDASWSES VDDDPTTLLG DVVLCPDVAR RQAEQAGHSF DRELSLLCTH
GILHLLGYDH AEPDEEREMW KVQSQLLASW DGADGADGAD GARGAADGAA DGGEGRRGDQ
GRRGDQGRGG GAGEPPAAPA R