Gene Francci3_1239 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_1239 
Symbol 
ID3903538 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp1483623 
End bp1484402 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content72% 
IMG OID637878573 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_480346 
Protein GI86739946 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.198291 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTTC AGCTGGCGGG CAAGGTGGTG CTGGTGACCG GCGGCTCGAA CGGGCTGGGA 
GCCGCCCTGG TGCGGACGCT GGCCGCCGAG GGGGCGCGGG TGGCCTTCTG CGGGCGCGAC
GAGACGCGGC TGCGGGAGGT CGCCGGGCAG GCGCAGGCCG GCGGTGGCGA GGTTCTCGCC
GTACCTGCCG ATGTGACCAG CATCACTGAC CTCGAACGTT TCGTCGCCAC CGCCGTCGAC
CGCTGGAACG CCGTCGACGC CCTGGTGAAC AACGCCGGCG CCAGCGCGGG CGGTACGTTC
GAGAACCAGA CCGACGAGGT CTGGAACGCC GATCTGGAGC TGAAGCTGCA CGCGGCGATC
CGGGCCTCCC GGCTGGTGTT GCCGTACCTG CGGCGCGCGG GCGGTGGCGG CATCGTGAAC
TCACTGTCCG TGGCGGCCAG AGCCCCCAGC GCCGGTTCCA CCCCGACCTC CGTCACCCGG
GCCGCGGGCC TCGCGCTCAC CAAGGCCCTG TCCAAGGAGC TCGGCCCGGA CCGGATCCGG
GTCAACGCGG TGCTGATCGG CCTGGTGGAG AGCGGGCAGT GGGATCGGGC GGCGGCCCGA
GAGAACATCA CGGTCGACGA GCTGTACGAA CGGATGGGGC GGACCTCCGG AATCCCGCTC
GGTCGGGTGG GCCGGGCCCA GGAGTTCGCC GATCTGGTCG CGTTCCTGCT CTCCGCGCGG
GCCGCCTACA TCACGGGTGC GACGATCAAC CTCGATGGCG GCCTCAGCCC GGTAGCCTGA
 
Protein sequence
MDLQLAGKVV LVTGGSNGLG AALVRTLAAE GARVAFCGRD ETRLREVAGQ AQAGGGEVLA 
VPADVTSITD LERFVATAVD RWNAVDALVN NAGASAGGTF ENQTDEVWNA DLELKLHAAI
RASRLVLPYL RRAGGGGIVN SLSVAARAPS AGSTPTSVTR AAGLALTKAL SKELGPDRIR
VNAVLIGLVE SGQWDRAAAR ENITVDELYE RMGRTSGIPL GRVGRAQEFA DLVAFLLSAR
AAYITGATIN LDGGLSPVA